Commits · 334e6434d255013fbf1b3746f683f0a3d4c7822d · OpenDAS / dgl

06 May, 2022 1 commit

[DGL-Go] CI for DGL-Go (#3959) · 334e6434

Mufei Li authored May 06, 2022

* Update

* Update

* Fix

* Update

* CI

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

334e6434

05 May, 2022 2 commits
- [CI] fetch status and generate report in separate node/machine (#3973) · 44dba197
  Rhett Ying authored May 05, 2022
  
  44dba197
- add bias argument (#3970) · 5b97a1a2
  Krzysztof Sadowski authored May 05, 2022
  
  5b97a1a2
29 Apr, 2022 3 commits
- fix bugs in gat training script (#3505) · ae7e3db6
  Hengrui Zhang authored Apr 29, 2022
```
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
```
  ae7e3db6
- [BugFix] fix CI status (#3963) · 3f792071
  Rhett Ying authored Apr 29, 2022
  
  3f792071
- [BugFix] fix job status in master CI (#3962) · 56614f32
  Rhett Ying authored Apr 29, 2022
```
* [BugFix] fix job status in master CI

* finalize
```
  56614f32
28 Apr, 2022 2 commits

[CI] fix job status (#3954) · 529fd107
Rhett Ying authored Apr 28, 2022
```
* [CI] fix job status

* fetch from master
```
529fd107

[Feature] Dataloader worker affinitization (#3723) · 5561af45

Daniil Sizov authored Apr 28, 2022



* PR3355 + CSR conversion workaround

* Remove debug code

* Fix convention errors

* Remove wrongly added code section during merge

* Update to reflect dataloading changes

* Fix missing changes

* Remove comment

* Fix linter errors

* Fix trailing whitespace

* Add wrapper around worker init function
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

5561af45

27 Apr, 2022 3 commits

[Feature] enable socket net_type for rpc (#3951) · 37be02a4

Rhett Ying authored Apr 28, 2022

* [Feature] enable socket net_type for rpc

* fix lint

* fix lint

* fix build issue on windows

* fix test failure on windows

* fix test failure

* fix cpp unit test failure

* net_type blocking max_try_times

* fix other comments

* fix lint

* fix comment

* fix lint

* fix cpp

37be02a4

[Bug] Fix multi-GPU edge classification crashing with pure GPU sampling (#3946) · c3baf433
Quan (Andy) Gan authored Apr 27, 2022
```
* fix

* fix
Co-authored-by: Xin Yao <xiny@nvidia.com>
```
c3baf433
[CI] refine status check (#3958) · 2eaa58e0
Rhett Ying authored Apr 27, 2022

2eaa58e0

26 Apr, 2022 1 commit

[Performance][GPU] Improving Disjoint Union kernel for Graph Dataloaders (#3895) · 6e46bbf5

ayasar70 authored Apr 26, 2022



* Based on issue #3436. Improving _SegmentCopyKernel s GPU utilization by switching to nonzero based thread assignment

* fixing lint issues

* Update cub for cuda 11.5 compatibility (#3468)

* fixing type mismatch

* tx guaranteed to be smaller than nnz. Hence removing last check

* minor: updating comment

* adding three unit tests for csr slice method to cover some corner cases

* timing repeatkernel

* clean

* clean

* clean

* updating _SegmentMaskColKernel

* Working on requests: removing sorted array check and adding comments to utility functions

* fixing lint issue

* Optimizing disjoint union kernel

* Trying to resolve compilation issue on CI

* [EMPTY] Relevant commit message here

* applying revision requests on cpu/disjoint_union.cc

* removing unnecessary casts

* remove extra space
Co-authored-by: Abdurrahman Yasar <ayasar@nvidia.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

6e46bbf5

25 Apr, 2022 2 commits
- [Bug] Fixed optimizer definition in gnn_explainer (#3944) (#3948) · 306e0a46
  Sharique Shamim authored Apr 25, 2022
```
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
  306e0a46
- [NN] GINEConv (#3934) · 248bece6
  Mufei Li authored Apr 25, 2022
```
* Update

* Update

* Update

* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  248bece6
24 Apr, 2022 1 commit

Fix benchmark time measurement (#3928) · df7a6121

Daniil Sizov authored Apr 24, 2022



* Fix benchmark time measurement

* Reduce batch size for bench_rgcn_homogeneous_ns am

bench_rgcn_homogeneous_ns am data sample size is too small for 1024 batch size
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

df7a6121

23 Apr, 2022 1 commit

Fix test_module_heat_kernel test (#3941) · 764b5d05

Serge Panev authored Apr 22, 2022


Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

764b5d05

22 Apr, 2022 2 commits
- [Example][Bug] Fix GAT example (#3947) · dc1c0ac2
  Quan (Andy) Gan authored Apr 22, 2022
```
* fix

* oops
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
  dc1c0ac2
- [Feature] Try upload report to s3 (#3891) · 338db32d
  Jinjing Zhou authored Apr 22, 2022
```
refactor CI report and log
```
  338db32d
15 Apr, 2022 1 commit
- [Doc] Fix documentation in dgl.multiprocessing namespace (#3929) · 4375c2d7
  Quan (Andy) Gan authored Apr 16, 2022
```
* fix docs

* remove

* oh

* fix
```
  4375c2d7
14 Apr, 2022 1 commit

[Example] Add EGES example (#3756) · f5bba284

WangYQ authored Apr 14, 2022



* add eges example

* remove csv files and add data link

* Update README.md

* Update main.py

* Update model.py

* Update sampler.py

* Update utils.py

* Update model.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

f5bba284

13 Apr, 2022 2 commits
- fix (#3903) · a0bf5daa
  Tong He authored Apr 13, 2022
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  a0bf5daa
- Update gatv2.py (#3921) · c380f0b5
  Mufei Li authored Apr 13, 2022
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
```
  c380f0b5
12 Apr, 2022 4 commits

[Feature] Enable UVA sampling with CPU indices (#3892) · e06e63d5

Quan (Andy) Gan authored Apr 12, 2022

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

e06e63d5

[Example] Cleaned GraphSAGE node classification example with PyTorch Lightning (#3863) · 0d878ff8
Quan (Andy) Gan authored Apr 12, 2022
```
* cleaned pl node classification example

* conform to PL's method of updating the dataloader

* update

* lint

* fix test

* fix
```
0d878ff8

[bugfix] Fix EdgePredictionSampler for UVA sampling (#3904) · baa92928

nv-dlasalle authored Apr 12, 2022



* Add failing unit test

* Fix negative sampler edge types

* fix test

* oops

* revert
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

baa92928

[Examples] Add pure gpu mode in the GraphSAGE node classification and link prediction (#3856) · f931c6ba

Serge Panev authored Apr 11, 2022


Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

f931c6ba

11 Apr, 2022 3 commits

[Feature] Enable UVA for GPU PinSAGE and RandomWalk (#3857) · 5fcd7f29

Xin Yao authored Apr 11, 2022



* enable uva for pinsage sampler

* unit test

* modify some checks on the python side

* remove legacy random walk code

* update unit test

* update unit test

* fix unit test

* adjust checks

* move some checks to c++

* move max_nodes check to cuda kernel

* fix ci for tf
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

5fcd7f29

[fix] device cannot be Nonetype object. (#3822) · 23a5e674

Peiqi Yin authored Apr 11, 2022



* fix device = none to cpu.

* fix singleton-comparison

* modify device is none

* fix use uva

* add docs

* add edge dataloader

* add doc

* fix trailing-whitespace

* modify default
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

23a5e674

[Doc] Fix Doc for EGNNConv (#3919) · 43b9d40e
Mufei Li authored Apr 11, 2022
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
43b9d40e

09 Apr, 2022 2 commits

[Example] Add TorchMetrics in README (#3913) · 01e50626

Mufei Li authored Apr 09, 2022



* Update README.md

* Update README.md

* Update README.md
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

01e50626

[BugFix] record/restore pin status when pickle/unpickle (#3914) · adb3a7c1

Rhett Ying authored Apr 09, 2022

* [BugFix] record/restore pin status when pickle/unpickle

* disable test on TF

* set version as expected

* unpin memory in test

adb3a7c1

08 Apr, 2022 1 commit
- Update (#3916) · ed15b471
  Mufei Li authored Apr 08, 2022
  
  ed15b471
07 Apr, 2022 1 commit

[NN] Add EGNN & PNA (#3901) · dc5035b1

rudongyu authored Apr 07, 2022



* add EGNN & PNA

* fix egnn issues

* fix pna issues

* update pna conv

* add doc strings

* update pnaconv

* fix unused args issue

* fix moment aggregation issue
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

dc5035b1

05 Apr, 2022 1 commit

[Examples] Update graphsage multi-gpu example to use mutliple GPUs for... · 27a6eb56

nv-dlasalle authored Apr 05, 2022


[Examples] Update graphsage multi-gpu example to use mutliple GPUs for validation and testing. (#3827)

* Update graphsage multi-gpu example to use mutliple GPUs for validation and
testing.

* Remove argmax

* Fix rebase error

* Add more documentation to example and simplify

* Switch to name shared memory

* Add comment about how training is distributed

* Restore iteration count

* fix munmap error reporting for better error messages
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

27a6eb56

31 Mar, 2022 2 commits
- [Doc] Hotfix for GraphSAINT Doc (#3898) · 11e910b6
  Mufei Li authored Mar 31, 2022
```
* Update graphsaint.py

* Update graphsaint.py
```
  11e910b6
- [Bugfix] Fix UVA sampling with partially specified node types (#3897) · 35e66f42
  Quan (Andy) Gan authored Mar 31, 2022
```
* fix uva with partial node types

* lint

* skip tensorflow unit test
```
  35e66f42
30 Mar, 2022 4 commits

[bugfix] Make source build work for systems where the default is python2 (#3718) · 7a2f4943

nv-dlasalle authored Mar 30, 2022



* Make compatible for system where the default is python2

* Update cmakelists with find package

* Switch to find_program
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

7a2f4943

[Feature] Radius Graph (#3829) · 4c7bd314

Krzysztof Sadowski authored Mar 30, 2022



* radius graph

* remove trailing whitespaces from docs

* disable invalid name for transform func

* disable radius graph module invalid name

* move pylint disable before init

* fix missing nodes from point set

* update docs indexing

* add compute mode as optional param

* radius graph test

* remove trailing whitespaces

* fix precision when comparing tensors
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

4c7bd314

[Transform] Random Walk Positional Encoding & Laplacian Positional Encoding (#3869) · 290b7c25

rudongyu authored Mar 30, 2022



* [Transform] Random Walk Positional Encoding & Laplacian Positional Encoding

* Update python/dgl/transforms/module.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py & python/dgl/transforms/module.py

* update python/dgl/transforms/functional.py

* update doc indexing

* update unit test

* support weighted graphs for random_walk_pe

* change reference

* fix linter errors

* fix datatype compatibility with MXNet & TF

* fix device errors

* fix result precision errors

* change tensorflow abs api

* reboost CI
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

290b7c25

[Sampler] [Example] SAINTSampler and Simplify GraphSAINT Example (#3879) · 9fee20b9

Mufei Li authored Mar 30, 2022



* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

9fee20b9