Commits · 30b8074af402777f0dbada5fd82f0866bde3311e · OpenDAS / dgl

02 May, 2020 1 commit

[Fix] Fix stream creation and empty dict in tensor serialization (#1489) · 30b8074a

Jinjing Zhou authored May 02, 2020

* add functions

* fix litn

* add unit test

* fix

* fix

* fix

* fix

* support empty dict

* simplify logic

* Update tensor_serialize.py

30b8074a

01 May, 2020 1 commit

[Hetero] Improve speed of several Hetero APIs (#1486) · f25bc176

Minjie Wang authored May 01, 2020

* add clone function to frame

* add utest

* replace all local_var with local_scope

* fix utest

* avoid creating canonical types in __getitem__

* lint

* try another utest  appraoch for mx

* utest

f25bc176

29 Apr, 2020 1 commit
- [Bugfix] Add bool data type to backend. (#1487) · 3c4506e9
  Minjie Wang authored Apr 29, 2020
```
* add bool to F.data_type_dict

* add utest

* skip bool test for mx
```
  3c4506e9
27 Apr, 2020 2 commits

[Data] Add utils to save dict of tensors (#1481) · 1506560e
Jinjing Zhou authored Apr 28, 2020
```
* add functions

* fix litn

* add unit test

* fix

* fix
```
1506560e

[KVStore] Bug fix (#1480) · 100ddd06

Chao Ma authored Apr 28, 2020



* update

* update

* update

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* update

* update

* update

* update

* fix lint

* update

* Update network.cc
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

100ddd06

26 Apr, 2020 1 commit

[KVStore] add init_data() on client (#1466) · 27520bc5

Chao Ma authored Apr 26, 2020

* add init_data on client

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

27520bc5

20 Apr, 2020 1 commit

[KVstore] Improve user infterface (#1454) · 5efd1c4a

Chao Ma authored Apr 21, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

5efd1c4a

09 Apr, 2020 2 commits

[Bug] Fix khop graph (#1433) · bd1e48a5
Mufei Li authored Apr 10, 2020
```
* Update

* Update

* Update
```
bd1e48a5

deprecate DGL-KE. (#1432) · e317f715

Da Zheng authored Apr 09, 2020



* deprecate DGL-KE.

* Update README.md

* remove from CI.

* remove tests.
Co-authored-by: Zheng <dzzhen@3c22fb0ed81b.ant.amazon.com>

e317f715

08 Apr, 2020 1 commit

[Regression] Fix regression test (#1426) · 1b37545d

Jinjing Zhou authored Apr 08, 2020

* fix

* fix

* fix

* fix

* fix

* 111

* fix

* fix

* fix

* test

* ff

* fix

* ff

* fix

* f

* merge

* fix

1b37545d

06 Apr, 2020 1 commit
- fix #1421 (#1422) · 91f7ff8e
  Quan (Andy) Gan authored Apr 06, 2020
  
  91f7ff8e
05 Apr, 2020 1 commit

[Feature] Simplify shared memory graph index (#1381) · 7c47d8c9

Da Zheng authored Apr 05, 2020



* simplify shared memory graph index.

* fix.

* remove edge_dir in SharedMemGraphStore.

* avoid creating shared-mem graph store with from_csr.

* simplify from_csr.

* add comments.

* fix lint.

* remove the test.

* fix compilation error.

* fix a bug.

* fix a bug.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

7c47d8c9

03 Apr, 2020 1 commit
- [BUG] Fix #1409 (#1411) · 24dc71fc
  Quan (Andy) Gan authored Apr 03, 2020
```
* [BUG] Fix #1409

* fix test
```
  24dc71fc
30 Mar, 2020 5 commits
- [Windows] fix compilation issues on vs2015 (#1405) · e4cc8185
  Quan (Andy) Gan authored Mar 30, 2020
```
* [Windows] fix compilation issues on vs2015

* fix test
```
  e4cc8185
- [TF] TF backend fix and new logic to choose backend (#1393) · e9440acb
  Jinjing Zhou authored Mar 30, 2020
```
* TF backend fix and new logic to choose backend

* fix

* fix

* fix

* fix

* fix backend

* fix

* dlpack alignment

* add flag

* flag

* lint

* lint

* remove unused

* several fixes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  e9440acb
- [Sampler] Change argument type of fanout from list to dict (#1403) · 4b4186f8
  Quan (Andy) Gan authored Mar 30, 2020
  
  4b4186f8
- [BUG] fix crash in neighbor sampling w/ replacement on 0 degree nodes (#1402) · 97b08fbb
  Quan (Andy) Gan authored Mar 30, 2020
  
  97b08fbb
- add an optional include_dst_in_src argument (#1401) · e3a9a6bb
  Quan (Andy) Gan authored Mar 30, 2020
  
  e3a9a6bb
29 Mar, 2020 1 commit

[Feature] Support nn modules for bipartite graphs. (#1392) · af61e2fb

Zihao Ye authored Mar 29, 2020



* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

af61e2fb

28 Mar, 2020 1 commit

[Feature] Deprecate multigraph (#1389) · 67cb7a43

xiang song(charlie.song) authored Mar 28, 2020



* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

67cb7a43

27 Mar, 2020 2 commits

[NN] Add HeteroGraphConv module for cleaner module definition (#1385) · 3efb5d8e

Minjie Wang authored Mar 27, 2020

* Add HeteroGraphConv

* add custom aggregator; some docstring

* debugging

* rm print

* fix some acc bugs

* fix initialization problem in weight basis

* passed tests

* lint

* fix graphconv flag; add error message

* add mxnet heteroconv

* more fix for mx

* lint

* fix torch cuda test

* fix mx test_nn

* add exhaust test for graphconv

* add tf heteroconv

* fix comment

3efb5d8e

[Feature] Casting between DGLGraph and DGLHeteroGraph (#1391) · bbfff8ce

Quan (Andy) Gan authored Mar 27, 2020



* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

bbfff8ce

25 Mar, 2020 1 commit
- [MXNet] Patch mxnet unittest (#1395) · 1e27e90e
  Jinjing Zhou authored Mar 26, 2020
```
* patch

* turn off tf test

* skip test

* fix
```
  1e27e90e
23 Mar, 2020 1 commit
- [BUG] Another fix on remove edges when all edges are removed (#1386) · b9c65e91
  Quan (Andy) Gan authored Mar 23, 2020
```
* [BUG] Another fix on remove edges when all edges are removed

* fix mxnet
```
  b9c65e91
22 Mar, 2020 2 commits
- [BUG] Fix remove_edges crashing with empty edge ID tensors (#1384) · d27b4859
  Quan (Andy) Gan authored Mar 22, 2020
  
  d27b4859
- [BUGFIX] Fix is_multigraph in the construction from scipy coo matrix (#1357) · 10253a5c
  Da Zheng authored Mar 22, 2020
```
* fix is_multigraph in from_coo.

* add tests for partition.

* fix.

* Revert "add tests for partition."

This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc.

* fix everywhere from_scipy_sparse_matrix is used.
```
  10253a5c
20 Mar, 2020 1 commit
- [Hetero] Replace card with num_nodes · 0f40c6e4
  Mufei Li authored Mar 20, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  0f40c6e4
19 Mar, 2020 1 commit
- [Bug] Multiple fixes (#1374) · 4af02022
  Quan (Andy) Gan authored Mar 19, 2020
```
* multiple fixes

* lint

* lint x2
```
  4af02022
18 Mar, 2020 1 commit
- [Bug] Fix dsttype in GraphSAGE minibatch model (#1371) · 0a51dc54
  Quan (Andy) Gan authored Mar 18, 2020
```
* fix for new ntype API for blocks

* adding two new interfaces
```
  0a51dc54
16 Mar, 2020 1 commit

[Model] RGCN mini-batch training; Better bipartite graph support (#1337) · 6111ea46

Minjie Wang authored Mar 16, 2020

* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore

6111ea46

15 Mar, 2020 1 commit
- [Model][Perf] Improve sage sampling performance (#1364) · d876680a
  Minjie Wang authored Mar 15, 2020
```
* improve speed

* fix bugs

* upd reg test
```
  d876680a
13 Mar, 2020 1 commit

[Optimization] Optimize performance of COOSort (#1349) · 5a1ef70f

xiang song(charlie.song) authored Mar 13, 2020



* Fix coo_sort

* Add COOSort test

* Fix

* omp

* coo2csr can benefit from sorted coo

* Add more test code

* Add LIBCXX_ENABLE_PARALLEL_ALGORITHMS to Makefile

* upd

* Turn off LIBCXX_ENABLE_PARALLEL_ALGORITHMS by default
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

5a1ef70f

11 Mar, 2020 1 commit

[Feature] Improve the speed of to_bidirected (#1327) · 1a584ced

Da Zheng authored Mar 10, 2020

* make graph symmetric

* call gklib routine.

* use gklib version except in windows.

* minor errors.

* fix test.

* update doc.

* fix a compile error.

* fix.

* add comments for the new C API.

* fix a bug.

* address comments.

* fix compile error.

* fix comment.

1a584ced

10 Mar, 2020 1 commit

[Optimization] Optimize CompactGraph (#1328) · 7b3a7b14

xiang song(charlie.song) authored Mar 10, 2020



* compact

* prealloc memory for hashtable

* Fix

* upd

* Reduce memory

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

7b3a7b14

09 Mar, 2020 2 commits
- [Test] Instruction for write regression test (#1341) · a0139923
  Jinjing Zhou authored Mar 09, 2020
```
* patch

* fix+1

* add readme
```
  a0139923
- [Test] asv conf fix (#1338) · 9abe0413
  Jinjing Zhou authored Mar 09, 2020
```
* patch

* fix+1
```
  9abe0413
08 Mar, 2020 1 commit

[Feature] add metis partitioning to DGL (#1308) · 0e153c4b

Da Zheng authored Mar 07, 2020



* add metis.

* add test.

* construct partition id.

* link to METIS github repo.

* update metis.

* add a tool for partitioning a graph.

* update metis.

* update.

* update.

* fix metis.

* fix lint

* fix indent.

* another way of building metis.

* disable metis in windows.

* test windows

* fix.

* disable metis for windows properly.

* fix for tensorflow.

* skip test for gpu.

* make graph symmetric

* address comments.

* more comments.

* fix compile

* fix a bug.

* add test.

* change the default #hops of HALO nodes.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>

0e153c4b

07 Mar, 2020 2 commits

[Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297) · a9520f71

Quan (Andy) Gan authored Mar 08, 2020

* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data

a9520f71

[Bugfix] Allows node types with no inbound/outbound edges (#1323) · ce6e19f2

Quan (Andy) Gan authored Mar 08, 2020

* add num nodes in ctors

* fix

* lint

* addresses comments

* replace with constexpr

* remove function with rvalue reference

* address comments

ce6e19f2

06 Mar, 2020 1 commit

[Feature] More serialization support (#1295) · 9caff617

Jinjing Zhou authored Mar 06, 2020



* fix script

* t

* fix weird bugs

* fix

* fix

* upload

* fix

* fix

* lint

* fix

* tmp

* fix serialization

* fix

* fix lint

* fix message

* fix

* lint

* address comment

* fix

* lint

* fix

* fix

* fix

* Remove duplicate serialization for meta graph
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

9caff617