GitLab

* [Model] MixHop for Node Classification task

* [docs] update

* [docs] update

* [fix] remove seed option

* [fix] update readme

* [feature] support qm9 dataset

* [style] update

* [docs] fix the details

* [fix] indexing only support int

* [style] update

* [fix] multiple backends support

* [docs] add qm9

* [fix] Z type: float32 -> int32

* [fix] Z type: int32 -> long

* [docs] add ref

* [docs] fix

* [docs] update

* [docs] update

* [fix] test eval

* [docs] fix example
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* add benchmarks

* add

* fix

* update

* remove RandomState

* tmp remove

* new batch

* fix

* fix

* fix

* address comment

* fix warning

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

This is a TensorFlow implementation of Simple Graph Convolution. For
simplicity, we use the implementation of AdamW in TensorFlow Addons
that differs from Adam in PyTorch. This results in worse performance
on the evaluation datasets.
Co-authored-by: Josh Carty <joshuac@spotify.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* [Bug Fix] Fix undefined var bug in LegacyTUDataset

* upt

* [Bug Fix] Fix cache file name bug in TUDataset
Co-authored-by: Tong He <hetong007@gmail.com>

* add sagpool example for pytorch backend

* polish sagpool example for pytorch backend

* [Example] SAGPool: use std variance

* [Example] SAGPool: change to std

* add sagpool example to index page

* add graph property prediction tag to sagpool

* [Example] add graph classification example HGP-SL

* [Example] fix sagpool

* fix bug

* [Example] change tab to space in README of hgp-sl

* remove redundant files

* remote redundant network

* [Example]: change link from code to doc in HGP-SL

* [Example] in HGP-SL, change to meaningful name

* [Example] Fix path mistake for 'hardgat'
Co-authored-by: zhangtianqi <tianqizh@amazon.com>

* added option for batching empty data, fixes #2526

* added option for batching empty data, fixes #2526

* decreased line lengths

* removed trailing whitespace

* fixed wrong feature name

* [Bugfix] stop erasing schema of frames w/ no cols (fixes #2528)

* removed arg doc
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* add benchmarks

* add

* fix

* update

* remove RandomState

* tmp remove
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* added option for batching empty data, fixes #2526

* added option for batching empty data, fixes #2526

* decreased line lengths

* removed trailing whitespace

* fixed wrong feature name

* now default behavior when all graphs are empty
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix munmap() using wrong parameter

* rename variables
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* gnnfilm

* update

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* [Doc] Add Chapter 7

* [Doc] Add CN part 7, 7.1, 7.2, and 7.3

* [Doc] Add CN part 7, 7.1, 7.2, and 7.3

* [Doc] 1st round copyediting, 7, 7.1, 7.2, and 7.3, removing EN parts.

* [Doc] 2nd round copyediting.

* [Doc] 3rd round copyediting.

* [Doc] Copyedit with reviewers' comments.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Doc] Add 1st CN in chapter 6

* [Doc] Add 1st CN in chapter 6

* [Doc] Add 1st CN in chapter 6.1

* [Doc] Add 1st CN in chapter 6.1

* [Doc] Add 1st CN in chapter 6.2

* [Doc] Add CN in chapter 6.2

* [Doc] Add CN in chapter 6.3

* [Doc] Fix a code bug in chapter 6.3

* [Doc] Add CN in chapter 6.4, 6.5, and 6.6.

* [Doc] Add CN in chapter 6.4, 6.5, and 6.6，then remove EN parts.

* [Doc] revised 6.4, 6.5, and 6.6.

* [Doc] 2nd round of copyediting.

* Delete syn1.bin

Remove this unrelated file to this branch

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Add chapter 7 in index page

* [Doc] edit chapter 6 in PR

* [Doc] edit chapter 6 in PR

* [Doc] Copyediting with Murphy and Minjie's comments.

* [Doc] Fix doc line in the previous chapters.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Add Implementation of GRAND

* Performance updated

* Update README.md

add indexing entries

* add indexing entries for grand

* change grand from 2021 to 2020

* [Example] fix some bugs

* [Examples] fix bug
Co-authored-by: 张恒瑞 <hengrui@macbook.local>
Co-authored-by: 张恒瑞 <hengrui@192.168.124.35>
Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update README.md

* Update README.md

* Update README.md

* fix doc build

* hide GPU code

fix typo
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Hide implementations that may cause confusions to the user

* add papers

* fix number of classes in Amazon Cobuy datasets

* add two papers to Awesome paper list

* Update README.md

* update graphdataloader in docs

* fix

* update examples

* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* new tutorials for small graphs

* address changes and use GraphDataLoader

* fix and add data

* fix load_data

* style fixes

* Update 5_graph_classification.py

* Add sage neighbor sample test for reddit

* Add ogbn-products dataset

* upd

* upd

* Add ogbn-mag

* rgcn heterogeneous performance test

* upd

* update

* upd

* upd

* use dgl dataloader

* upd

* Update with new collator
Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* return indices from dataloader

* fixes

* fix

* fix distgraph and added some todos

* Update dataloader.py

* Update dataloader.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* add graph dataloader

* add to doc

* fix

* fix

* fix docstring

* update according to torch default_collate

* add unittest

* fix

* fix lint

* fix