1. 25 Jan, 2021 1 commit
    • Da Zheng's avatar
      [Distributed] Heterogeneous graph support (#2457) · 25ac3344
      Da Zheng authored
      
      
      * Distributed heterograph (#3)
      
      * heterogeneous graph partition.
      
      * fix graph partition book for heterograph.
      
      * load heterograph partitions.
      
      * update DistGraphServer to support heterograph.
      
      * make DistGraph runnable for heterograph.
      
      * partition a graph and store parts with homogeneous graph structure.
      
      * update DistGraph server&client to use homogeneous graph.
      
      * shuffle node Ids based on node types.
      
      * load mag in heterograph.
      
      * fix per-node-type mapping.
      
      * balance node types.
      
      * fix for homogeneous graph
      
      * store etype for now.
      
      * fix data name.
      
      * fix a bug in example.
      
      * add profiler in rgcn.
      
      * heterogeneous RGCN.
      
      * map homogeneous node ids to hetero node ids.
      
      * fix graph partition book.
      
      * fix DistGraph.
      
      * shuffle eids.
      
      * verify eids and their mappings when loading a partition.
      
      * Id map from homogneous Ids to per-type Ids.
      
      * verify partitioned results.
      
      * add test for distributed sampler.
      
      * add mapping from per-type Ids to homogeneous Ids.
      
      * update example.
      
      * fix DistGraph.
      
      * Revert "add profiler in rgcn."
      
      This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676.
      
      * add tests for homogeneous graphs.
      
      * fix a bug.
      
      * fix test.
      
      * fix for one partition.
      
      * fix for standalone training and evaluation.
      
      * small fix.
      
      * fix two bugs.
      
      * initialize projection matrix.
      
      * small fix on RGCN.
      
      * Fix rgcn performance (#17)
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-62-171.ec2.internal>
      
      * fix lint.
      
      * fix lint.
      
      * fix lint.
      
      * fix lint.
      
      * fix lint.
      
      * fix lint.
      
      * fix.
      
      * fix test.
      
      * fix lint.
      
      * test partitions.
      
      * remove redundant test for partitioning.
      
      * remove commented code.
      
      * fix partition.
      
      * fix tests.
      
      * fix RGCN.
      
      * fix test.
      
      * fix test.
      
      * fix test.
      
      * fix.
      
      * fix a bug.
      
      * update dmlc-core.
      
      * fix.
      
      * fix rgcn.
      
      * update readme.
      
      * add comments.
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
      Co-authored-by: default avatarxiang song(charlie.song) <classicxsong@gmail.com>
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-62-171.ec2.internal>
      
      * fix.
      
      * fix.
      
      * add div_int.
      
      * fix.
      
      * fix.
      
      * fix lint.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * adjust.
      
      * move code.
      
      * handle heterograph.
      
      * return pytorch tensor in GPB.
      
      * remove some tests in example.
      
      * add to_block for distributed training.
      
      * use distributed to_block.
      
      * remove unnecessary function in DistGraph.
      
      * remove distributed to_block.
      
      * use pytorch tensor.
      
      * fix a bug in ntypes and etypes.
      
      * enable norm.
      
      * make the data loader compatible with the old format.
      
      * fix.
      
      * add comments.
      
      * fix a bug.
      
      * add test for heterograph.
      
      * support partition without reshuffle.
      
      * add test.
      
      * support partition without reshuffle.
      
      * fix.
      
      * add test.
      
      * fix bugs.
      
      * fix lint.
      
      * fix dataset.
      
      * fix for mxnet.
      
      * update docstring.
      
      * rename to floor_div
      
      * avoid exposing NodePartitionPolicy and EdgePartitionPolicy.
      
      * fix docstring.
      
      * fix error.
      
      * fixes.
      
      * fix comments.
      
      * rename.
      
      * rename.
      
      * explain IdMap.
      
      * fix docstring.
      
      * fix docstring.
      
      * update docstring.
      
      * remove the code of returning heterograph.
      
      * remove argument.
      
      * fix example.
      
      * make GraphPartitionBook an abstract class.
      
      * fix.
      
      * fix.
      
      * fix a bug.
      
      * fix a bug in example
      
      * fix a bug
      
      * reverse heterograph sampling.
      
      * temp fix.
      
      * fix lint.
      
      * Revert "temp fix."
      
      This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381.
      
      * compute norm.
      
      * Revert "reverse heterograph sampling."
      
      This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9.
      
      * fix.
      
      * move id_map.py
      
      * remove check
      
      * add more comments.
      
      * update docstring.
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
      Co-authored-by: default avatarxiang song(charlie.song) <classicxsong@gmail.com>
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-62-171.ec2.internal>
      25ac3344
  2. 17 Aug, 2020 1 commit
    • Mufei Li's avatar
      [Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) · be444e52
      Mufei Li authored
      
      
      * Update graph
      
      * Fix for dgl.graph
      
      * from_scipy
      
      * Replace canonical_etypes with relations
      
      * from_networkx
      
      * Update for hetero_from_relations
      
      * Roll back the change of canonical_etypes to relations
      
      * heterograph
      
      * bipartite
      
      * Update doc
      
      * Fix lint
      
      * Fix lint
      
      * Fix test cases
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Update
      
      * Fix test
      
      * Fix
      
      * Update
      
      * Use DGLError
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Update
      
      * Fix
      
      * Update
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Update
      
      * Fix
      
      * Update
      
      * Fix
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Fix
      
      * Fix
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * rewrite sanity checks
      
      * delete unnecessary checks
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Update
      
      * Fix
      
      * Update
      
      * Update
      
      * Update
      
      * Fix
      
      * Fix
      
      * Fix
      
      * Update
      
      * Fix
      
      * Update
      
      * Fix
      
      * Fix
      
      * Update
      
      * Fix
      
      * Update
      
      * Fix
      Co-authored-by: default avatarxiang song(charlie.song) <classicxsong@gmail.com>
      Co-authored-by: default avatarMinjie Wang <wmjlyjemaine@gmail.com>
      Co-authored-by: default avatarQuan Gan <coin2028@hotmail.com>
      be444e52
  3. 10 Aug, 2020 1 commit
    • Da Zheng's avatar
      Fix the performance issue of graph partitioning in new DGLGraph (#1934) · 729ff2ef
      Da Zheng authored
      
      
      * fix perf.
      
      * fix.
      
      * accelerate metis.
      
      * fix lint.
      
      * use gklib.
      
      * fix perf.
      
      * fix.
      
      * update metis.
      
      * update launch script
      
      * handle synchronized API.
      
      * fix.
      
      * fix example.
      
      * fix dataloader.
      
      * temp fix.
      
      * temp fix omp.
      
      * distinguish roles.
      
      * initialize iterator of DistDataloader correctly.
      
      * check the correctness of launch script.
      
      * move feature copy to sampler.
      
      * measure mem/network copy time.
      
      * remove
      
      * Revert "measure mem/network copy time."
      
      This reverts commit 86cefdc14b7815fcf5aad6496af912dba48e4aa6.
      
      * fix.
      
      * fix
      
      * fix.
      
      * fix cmake.
      
      * disable metis in windows.
      
      * disable metis tests in windows.
      
      * remove test for multigraph.
      
      * fix test.
      
      * fix.
      
      * fix cmake.
      
      * fix.
      
      * revert.
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-19-115.us-west-2.compute.internal>
      Co-authored-by: default avatarUbuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
      729ff2ef
  4. 22 Jul, 2020 1 commit