GitLab

* Distributed heterograph (#3)

* heterogeneous graph partition.

* fix graph partition book for heterograph.

* load heterograph partitions.

* update DistGraphServer to support heterograph.

* make DistGraph runnable for heterograph.

* partition a graph and store parts with homogeneous graph structure.

* update DistGraph server&client to use homogeneous graph.

* shuffle node Ids based on node types.

* load mag in heterograph.

* fix per-node-type mapping.

* balance node types.

* fix for homogeneous graph

* store etype for now.

* fix data name.

* fix a bug in example.

* add profiler in rgcn.

* heterogeneous RGCN.

* map homogeneous node ids to hetero node ids.

* fix graph partition book.

* fix DistGraph.

* shuffle eids.

* verify eids and their mappings when loading a partition.

* Id map from homogneous Ids to per-type Ids.

* verify partitioned results.

* add test for distributed sampler.

* add mapping from per-type Ids to homogeneous Ids.

* update example.

* fix DistGraph.

* Revert "add profiler in rgcn."

This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676.

* add tests for homogeneous graphs.

* fix a bug.

* fix test.

* fix for one partition.

* fix for standalone training and evaluation.

* small fix.

* fix two bugs.

* initialize projection matrix.

* small fix on RGCN.

* Fix rgcn performance (#17)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal>

* fix lint.

* fix lint.

* fix lint.

* fix lint.

* fix lint.

* fix lint.

* fix.

* fix test.

* fix lint.

* test partitions.

* remove redundant test for partitioning.

* remove commented code.

* fix partition.

* fix tests.

* fix RGCN.

* fix test.

* fix test.

* fix test.

* fix.

* fix a bug.

* update dmlc-core.

* fix.

* fix rgcn.

* update readme.

* add comments.
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal>

* fix.

* fix.

* add div_int.

* fix.

* fix.

* fix lint.

* fix.

* fix.

* fix.

* adjust.

* move code.

* handle heterograph.

* return pytorch tensor in GPB.

* remove some tests in example.

* add to_block for distributed training.

* use distributed to_block.

* remove unnecessary function in DistGraph.

* remove distributed to_block.

* use pytorch tensor.

* fix a bug in ntypes and etypes.

* enable norm.

* make the data loader compatible with the old format.

* fix.

* add comments.

* fix a bug.

* add test for heterograph.

* support partition without reshuffle.

* add test.

* support partition without reshuffle.

* fix.

* add test.

* fix bugs.

* fix lint.

* fix dataset.

* fix for mxnet.

* update docstring.

* rename to floor_div

* avoid exposing NodePartitionPolicy and EdgePartitionPolicy.

* fix docstring.

* fix error.

* fixes.

* fix comments.

* rename.

* rename.

* explain IdMap.

* fix docstring.

* fix docstring.

* update docstring.

* remove the code of returning heterograph.

* remove argument.

* fix example.

* make GraphPartitionBook an abstract class.

* fix.

* fix.

* fix a bug.

* fix a bug in example

* fix a bug

* reverse heterograph sampling.

* temp fix.

* fix lint.

* Revert "temp fix."

This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381.

* compute norm.

* Revert "reverse heterograph sampling."

This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9.

* fix.

* move id_map.py

* remove check

* add more comments.

* update docstring.
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal>

* [Model] MixHop for Node Classification task

* [docs] update

* [docs] update

* [fix] remove seed option

* [fix] update readme

* [feature] support qm9 dataset

* [style] update

* [docs] fix the details

* [fix] indexing only support int

* [style] update

* [fix] multiple backends support

* [docs] add qm9

* [fix] Z type: float32 -> int32

* [fix] Z type: int32 -> long

* [docs] add ref

* [docs] fix

* [docs] update

* [docs] update

* [fix] test eval

* [docs] fix example
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* add sagpool example for pytorch backend

* polish sagpool example for pytorch backend

* [Example] SAGPool: use std variance

* [Example] SAGPool: change to std

* add sagpool example to index page

* add graph property prediction tag to sagpool

* [Example] add graph classification example HGP-SL

* [Example] fix sagpool

* fix bug

* [Example] change tab to space in README of hgp-sl

* remove redundant files

* remote redundant network

* [Example]: change link from code to doc in HGP-SL

* [Example] in HGP-SL, change to meaningful name

* [Example] Fix path mistake for 'hardgat'
Co-authored-by: zhangtianqi <tianqizh@amazon.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* gnnfilm

* update

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* Add Implementation of GRAND

* Performance updated

* Update README.md

add indexing entries

* add indexing entries for grand

* change grand from 2021 to 2020

* [Example] fix some bugs

* [Examples] fix bug
Co-authored-by: 张恒瑞 <hengrui@macbook.local>
Co-authored-by: 张恒瑞 <hengrui@192.168.124.35>
Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* update graphdataloader in docs

* fix

* update examples

* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* add sagpool example for pytorch backend

* polish sagpool example for pytorch backend

* [Example] SAGPool: use std variance

* [Example] SAGPool: change to std

* add sagpool example to index page

* add graph property prediction tag to sagpool
Co-authored-by: zhangtianqi <tianqizh@amazon.com>

* Update

* Update

* Update

* Update README.md

* Update README.md

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update gatedgraphconv.py

* Update entity_classify.py

* Update data-process.rst

* Update reading_data.py

* Update data-process.rst

* Update utils.py

* Update knowledge_graph.py

* Update entity_classify.py

* Update rdf.py

* Update entity_classify_mb.py

* Update test_classify.py

* Update tensor.py

* Update sparse.py

* Update entity_classify_mp.py

* Update 6_line_graph.py

* [Model] MixHop for Node Classification task

* [docs] update

* [docs] update

* [fix] remove seed option

* [fix] update readme
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* correct error when using enisum

* Correct error when using enisum
Co-authored-by: Zihao Ye <expye@outlook.com>

Co-authored-by: Zihao Ye <expye@outlook.com>

* modify code with buildin function

* use enisum
Co-authored-by: Zihao Ye <expye@outlook.com>

In the bucket sampler, the length array should be recovered after random picking samples.

* sign for ogbn products, arxiv, mag

* texts

* fix

* update ogb folder readme

* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* upd

* upd

* upd

* upd

* upd

* fix OpenMP compatibility issues

* typo

* partition

* misc

* fix typo

* num_parts=1

* import torch

* long

* print info

* print info

* print info

* upd

* remove debug code

* revert partition.py

* fix cut count

* fix cut count

* Revert "fix cut count"

This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.

* Revert "fix cut count"

This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.

* type of deprecate

* typo in deprecate info

* fix typo

* use cv for partitioning

* CE

* no message

* revert

* typo

* no message

* no message

* no message

* practice

* dmlc-core

* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Bug] fix multiple bugs in JTNN example

* remove debug code

* add sparse and mutil gpu support

* update multi gpu

* update readme

* remove multi gpu

* add multiple gpus support
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* line

* two lines

* update readme

* readme

* update readme

* update

* Implement LINE

* readme

* readme

* typos

* update readme
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

* Update GCN on ogbn-arxiv

* Add GAT for ogbn-arxiv

* Update README.md

* Update GAT on ogbn-arxiv

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* update

* update

* update

* update

* update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-10-127.us-west-2.compute.internal>
Co-authored-by: Chao Ma <mctt90@gmail.com>

* line

* two lines

* update readme

* readme

* update readme

* update
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

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Co-authored-by: hzliuchw <hzliuchw@corp.netease.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Update dgl.DGLGraph.rst

* Update gcn.py

* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>