GitLab

Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* * Fixed race condition bug in distributed/optim/pytorch/sparse_optim.py's SparseAdam::update, corresponding with the bug fixed in the non-distributed version in https://github.com/dmlc/dgl/pull/3013 , though using the newer Event-based approach from that corresponding function.  The race condition would often result in NaNs, like the previously fixed bug. https://github.com/dmlc/dgl/issues/2760



* * Fixed race condition bug in SparseAdagrad::update corresponding with the one fixed in SparseAdam::update in the previous commit.  Same info applies.

* * Fixed typo in all copies of a repeatedly-copied comment near bug fixed 3 commits ago, checking all implementations nearby for a corresponding bug.  (All of them appear to have been fixed as of 2 commits ago.)

* * Removed trailing whitespace
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Model]P-GNN

* updata

* [Example]P-GNN

* Update README.md

* Add NodeFeatureMasking and NormalizeFeatures

* Update

* Update transforms.rst

* Update

* Update

* Update

* Update test_transform.py

* Update

* Update

* Update test_transform.py

* Update module.py

* Update module.py

* Update module.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update

* Update

* Fix

* Update

* CI

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* [BugFix] fix job status in master CI

* finalize

* [CI] fix job status

* fetch from master

* PR3355 + CSR conversion workaround

* Remove debug code

* Fix convention errors

* Remove wrongly added code section during merge

* Update to reflect dataloading changes

* Fix missing changes

* Remove comment

* Fix linter errors

* Fix trailing whitespace

* Add wrapper around worker init function
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* [Feature] enable socket net_type for rpc

* fix lint

* fix lint

* fix build issue on windows

* fix test failure on windows

* fix test failure

* fix cpp unit test failure

* net_type blocking max_try_times

* fix other comments

* fix lint

* fix comment

* fix lint

* fix cpp

* fix

* fix
Co-authored-by: Xin Yao <xiny@nvidia.com>

* Based on issue #3436. Improving _SegmentCopyKernel s GPU utilization by switching to nonzero based thread assignment

* fixing lint issues

* Update cub for cuda 11.5 compatibility (#3468)

* fixing type mismatch

* tx guaranteed to be smaller than nnz. Hence removing last check

* minor: updating comment

* adding three unit tests for csr slice method to cover some corner cases

* timing repeatkernel

* clean

* clean

* clean

* updating _SegmentMaskColKernel

* Working on requests: removing sorted array check and adding comments to utility functions

* fixing lint issue

* Optimizing disjoint union kernel

* Trying to resolve compilation issue on CI

* [EMPTY] Relevant commit message here

* applying revision requests on cpu/disjoint_union.cc

* removing unnecessary casts

* remove extra space
Co-authored-by: Abdurrahman Yasar <ayasar@nvidia.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update

* Update

* Update

* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Fix benchmark time measurement

* Reduce batch size for bench_rgcn_homogeneous_ns am

bench_rgcn_homogeneous_ns am data sample size is too small for 1024 batch size
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* fix

* oops
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

refactor CI report and log

* fix docs

* remove

* oh

* fix

* add eges example

* remove csv files and add data link

* Update README.md

* Update main.py

* Update model.py

* Update sampler.py

* Update utils.py

* Update model.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

* cleaned pl node classification example

* conform to PL's method of updating the dataloader

* update

* lint

* fix test

* fix

* Add failing unit test

* Fix negative sampler edge types

* fix test

* oops

* revert
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* enable uva for pinsage sampler

* unit test

* modify some checks on the python side

* remove legacy random walk code

* update unit test

* update unit test

* fix unit test

* adjust checks

* move some checks to c++

* move max_nodes check to cuda kernel

* fix ci for tf
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* fix device = none to cpu.

* fix singleton-comparison

* modify device is none

* fix use uva

* add docs

* add edge dataloader

* add doc

* fix trailing-whitespace

* modify default
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update README.md

* Update README.md

* Update README.md
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* [BugFix] record/restore pin status when pickle/unpickle

* disable test on TF

* set version as expected

* unpin memory in test

* add EGNN & PNA

* fix egnn issues

* fix pna issues

* update pna conv

* add doc strings

* update pnaconv

* fix unused args issue

* fix moment aggregation issue
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

[Examples] Update graphsage multi-gpu example to use mutliple GPUs for validation and testing. (#3827)

* Update graphsage multi-gpu example to use mutliple GPUs for validation and
testing.

* Remove argmax

* Fix rebase error

* Add more documentation to example and simplify

* Switch to name shared memory

* Add comment about how training is distributed

* Restore iteration count

* fix munmap error reporting for better error messages
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>