GitLab

* change timeout to reasonable ranges

* rgcn ns

* fix all ns speed tests
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* add convert.

* fix.

* add write_mag.

* fix convert_partition.py

* write data.

* use pyarrow to read.

* update write_mag.py

* fix convert_partition.py.

* load node/edge features when necessary.

* reshuffle nodes.

* write mag correctly.

* fix a bug: inner nodes in a partition might be empty.

* fix bugs.

* add verify code.

* insert reverse edges.

* fix a bug.

* add get node/edge data.

* add instructions.

* remove unnecessary argument.

* update distributed preprocessing.

* fix readme.

* fix.

* fix.

* fix.

* fix readme.

* fix doc.

* fix.

* update readme

* update doc.

* update readme.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* add benchmarks

* add

* fix

* update

* remove RandomState

* tmp remove

* new batch

* fix

* fix

* fix

* address comment

* fix warning

* fix

* fix

* fix

* fix

* add multiupdate all

* address comment

* fix

* add benchmarks

* add

* fix timing

* fix

* push

* add -v

* [Example] NGCF (#2564)

* ngcf

* ngcf

* update
Co-authored-by: zhjwy9343 <6593865@qq.com>

* Revert "[Example] NGCF (#2564)" (#2611)

This reverts commit a75e04f408c719289f478ca129784e05655d8def.

* fix

* change task

* fix

* fix

* fix2

* enable tensoradapter when benchmark

* minor fix

* trigger ci

* fix

* fix

* fix

* fix

* fix

* fix

* lint

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>

* fix inconsistencies and GPu

* bug fixes

* fix

* trigger new tutorials

* fix doc

* update docstring for transformation on batch graph

* update cn guide

* fix format

* update rst

Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* Add start of to_block gpu implementation

* Pull in more changes from 0.4.2 cuda_to_block

* Move more code to IdArray

* Refactor DeviceNodeMapMaker

* Updates

* get compiling

* Integrate to_block

* Fix ID allocation

* Minor fixes

* Cleanup cuda calls to use cuda_common

* Reduce kernel calls

* Lint cleanup

* Expand documentation

* Remove unused function

* Rename variables for consistency

* Add doxygen comments

* Fix file extension

* Remove raw asynccopy for deviceapi

* Remove unused function

* Fix block/tile configuration

* Add cuda_device_common.cuh

* Add basic hashtable

* Migrate part of hashtable

* Refactor to use external hashtable

* Make functions members

* Format hash table functions

* Migrate duplicate filling

* Move last function over

* Refactor with cu file

* lint c++ code

* Move context check to C++ code

* Use macro switch

* Add missing files

* Update docstring

* update docs

* Move atomic functions

* Refactor hashtable

* Fix linting

* Expand docs

* Fix mismatched argument names

* Switch doxygen comments from using @param to \param
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add dependencies for GNN-Film and dagnn

* fix

* fix

* fix

* large graph training tutorials

* add full graph link prediction update

* fix

* fix

* fix

* addressed comments

* [Bug Fix][Example] hgp-sl: More info for running

* change list to table

* change dataset summary in gxn and sagpool

* remove redundent
Co-authored-by: Tong He <hetong007@gmail.com>

* update

* Misc fix

* Update

* add multihead in DotGatConv

* Fix spacing issue

* Add Unit test for dotgat

* Modified Unit test for dotgat

* Add transformer like divisor

* Update dotgatconv.py

* Update hgao.py

* Update train.py
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* Fix pytorch TCP kvstore bug

* lint

* Fix

* upd

* Fix lint

* Fix

* trigger

* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* ngcf

* ngcf

* update

* ngcf

* ngcf

* remove data

* update

* data
Co-authored-by: zhjwy9343 <6593865@qq.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* model acc test

* add model speed test

* [Example] NGCF (#2564)

* ngcf

* ngcf

* update
Co-authored-by: zhjwy9343 <6593865@qq.com>

* Revert "[Example] NGCF (#2564)" (#2611)

This reverts commit d88a9b1b2c52becb8cc7faebceca6e52c763de19.

* use timer
Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* [Model] update PointNet example for Part Segmentation

* Fixed issues with pointnet examples

* update the README

* Added image

* Fixed README and tensorboard arguments

* clean

* Add timing

* Update README.md

* Update README.md

Fixed a typo
Co-authored-by: Tong He <hetong007@gmail.com>

[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 (#2592)

* Update

* Update

* Update

* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Tong He <hetong007@gmail.com>

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* add benchmarks

* add

* fix

* update

* remove RandomState

* tmp remove

* new batch

* fix

* fix

* fix

* address comment

* fix warning

* fix

* fix

* fix

* fix

* add multiupdate all

* address comment

* fix

* add benchmarks

* add

* fix timing

* fix

* push

* add -v

* [Example] NGCF (#2564)

* ngcf

* ngcf

* update
Co-authored-by: zhjwy9343 <6593865@qq.com>

* Revert "[Example] NGCF (#2564)" (#2611)

This reverts commit a75e04f408c719289f478ca129784e05655d8def.

* fix

* change task

* fix

* fix

* fix2

* enable tensoradapter when benchmark

* minor fix

* trigger ci

* fix

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>

* upd

* trigger

* upd

It seems that there is a bug in Sparseadam in PyTorch, and it can be temporarily fixed by: 
optimizer = optim.SparseAdam(list(self.skip_gram_model.parameters()), lr=self.initial_lr)
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* fix

* ?
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [Feature] Add reverse edges in CitationGraphDataset

* fix bug

* fix bug

* fix bug

* Update python/dgl/data/citation_graph.py
Co-authored-by: Xiangkun Hu <huxk_hit@qq.com>

* fix notes

* fix notes

* fix bugs

* solve requested changes

* fix bug

* fix bug
Co-authored-by: Xiangkun Hu <huxk_hit@qq.com>

* upd

* upd

* fix heterograph conv

* remove test cases

* fix test

* fix test

* fix test
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add multihead in DotGatConv

* Fix spacing issue

* Add Unit test for dotgat

* Modified Unit test for dotgat

* Add transformer like divisor

* Update dotgatconv.py
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* update doc of dgl.function

* small fix

* add bench jenkins

* instance type

* fix

* fix

* fix

* 111

* test

* 111

* 111

* fix

* test

* run

* fix

* fix

* fix

* fix

* fix

* publish results

* 111

* regression

* launch ec2 script

* fix

* add

* run on master

* change

* rrr

* run gpu

* fix

* fix

* try fix

* fix

* ff

* fix

* fix

* fix

* refactor

* fix

* fix

* update

* fix

* fix

* fix

* fix

* remove import torchtext

* add shm size

* update

* fix

* fix

* fix

* fix

* fix this!!!!

* 111

* fix

* remove verbose

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* update readme

* fix

* fix

* fix

* change asv default to head

* commit sage and rgcn

* fix

* update

* add benchmarks

* add

* fix

* update

* remove RandomState

* tmp remove

* new batch

* fix

* fix

* fix

* address comment

* fix warning

* fix

* fix

* fix

* fix

* add multiupdate all

* address comment

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

This reverts commit a613ad88.

* add tvm as submodule

* compilation is ok but calling fails

* can call now

* pack multiple modules, change names

* upd

* upd

* upd

* fix cmake

* upd

* upd

* upd

* upd

* fix

* relative path

* upd

* upd

* upd

* singleton

* upd

* trigger

* fix

* upd

* count reducible

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* only keep related files

* upd

* upd

* upd

* upd

* lint

* lint

* lint

* lint

* pylint

* upd

* upd

* compilation

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd doc

* refactor

* fix

* upd number
Co-authored-by: Zhi Lin <linzhilynn@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-42-78.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-21-156.us-east-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Add sparse embedding for dgl and update rgcn example

* upd

* Fix

* Revert "Fix"

This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a.

* Fix

* upd

* upd

* Fix

* Add unitest and update impl

* fix

* Clean up rgcn example code

* upd

* upd

* update

* Fix

* update score

* sparse for sage

* remove model sparse

* upd

* upd

* remove global norm

* revert delete model_sparse.py

* update according to comments

* Fix doc

* upd

* Fix test

* upd

* lint

* lint

* lint

* upd

* upd

* clean up
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* add initial kernel benchmarks

* finished kernel benchmarks

* add desc

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add sagpool example for pytorch backend

* polish sagpool example for pytorch backend

* [Example] SAGPool: use std variance

* [Example] SAGPool: change to std

* add sagpool example to index page

* add graph property prediction tag to sagpool

* [Example] add graph classification example HGP-SL

* [Example] fix sagpool

* fix bug

* [Example] change tab to space in README of hgp-sl

* remove redundant files

* remote redundant network

* [Example]: change link from code to doc in HGP-SL

* [Example] in HGP-SL, change to meaningful name

* [Example] Fix path mistake for 'hardgat'

* [Bug Fix] Fix undefined var bug in LegacyTUDataset

* upt

* [Bug Fix] Fix cache file name bug in TUDataset

* [Example] Add GXN example for pytorch backend

* modify readme

* add more exp result
Co-authored-by: zhangtianqi <tianqizh@amazon.com>
Co-authored-by: Tong He <hetong007@gmail.com>

A small patch to #2391.

* Remove double-checking sorted

* Remove sorting of CSR by default

* Update unit test to use unsorted matix

* delete whitespace

* Expand unit tests

* Replace cusparse sort

* Fix row column sorting

* Explicitly don't sort columns

* Fix linting errors

* Fix bit-width calculation

* Fix sorting assertion and unit test

* Fix linting

* Improve CPU COO2CSR

* Remove references

* Rename and add documentation to edge encoding/decoding funcionts

* Fix sorting keys as 64 bit

* Revert cosmetic changes to unit tests

* Update documentation

* Update complexity documentation for coo to csr conversion

* Remove COOIsSorted check in CPU implementation too