GitLab

* [Doc] User guide section 5 and 6

* oops

* fix

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* test idea

* cuda kernels

* lint and fixes

* lint

* change to another strategy

* use infinity

* fix
Co-authored-by: Zihao Ye <expye@outlook.com>

* Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [New] Update landing page

* [New] Update landing page

* [New] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Improvement] use dgl build-in in dotgatconv

* [Doc] review API doc string bottom up

* [Doc] Add doc of input and output features

* [Doc] Update doc string for pooling and transformer.

* [Doc] Reformat doc string and change some wordings.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* aaa

* revert

* 111

* fix

* fff

* 111

* try

* debug

* fff

* 111

* 1111

* fix

* try

* 111

* 111

* print

* f

* 111

* revert

* fix

* revert

* add timeout

* Revert "add timeout"

This reverts commit fb34f67f11ad6556824daa6efa29a6ec2c7c1d3e.

* fix.

* add tests.

* fix.

* fix.

* fix.

* doesn't support EdgeDataLoader

* add test.

* fix.

* fix test.

* catch errors in the test.

* fix.

* fix error message

* add print.

* join the server processes.

* update test.

* fix test.

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* Fix memory leak

* update

* update

* update

* update

* update

* update

* update

* up

* pylint

* upd

* no degre check on sage

* fix pytest

* no in degree check for heteroconv

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* load hetero

* fix

* more error message

* add warning

* add alias to dgl namespace

* fix tests

* go through gcn, relgcn

* fix tagconv formula

* fix doc in sageconv

* fix sgconv doc

* replace hat with tilde

* more comments on gmmconv

* fix agnnconv chebconv doc

* modify nnconv doc

* remove &

* add nn conv examples

* Rebase master

* More merge conflicts

* check homo

* add back self loop for some convs, check homo in tranform

* add example for denseconv

* add example and doc for dotgat and cfconv

* check in-degree for graphconv

* add language fix

* gconv address all comments

* another round of change based on api template

* change agnn

* go through agnn, appnp, atomic, cf, cheb, dense, gat, sage modules

* finish pytorch part of nn conv

* mxnet graphconv done

* tensorflow graphconv works

* add new modules into doc

* add comments to not split code

* refine doc

* resr

* more comments

* more fix

* finish conv and dense conv part api

* pylint fix

* fix pylink

* fix pylint

* more fix

* fix

* fix test fail because zere in degree

* fix test fail

* sage is not update for mxnet tf
Co-authored-by: Ubuntu <ubuntu@ip-172-31-0-81.us-east-2.compute.internal>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* update

* update

* Lazy to device

* remove print

* lint

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* lint

* Fix

* Revert "Fix"

This reverts commit 615c9b8f80f5f6ee2ab43c849a22f0083deedf3b.

* Add test for frame lazy update

* disable tensorflow

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* remove duplicate edges

* Update README.md

* change model save and load

* Update README.md

* Update README.md

* rename get_data_size.

* remove g from DistTensor.

* remove g from DistEmbedding.

* clean up API of graph partition book.

* fix DistGraph

* fix lint.

* collect all part policies.

* fix.

* fix.

* support distributed sampler.

* remove partition.py

* [Model] Fix GCMC debugging code

* use the one with apply_edges

* move server start code to initialize.

* fix.

* fix lint.

* fix examples.

* add more checks.

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* up

* pylint

* clean commit

* oops forgot the most important files

* use einsum

* copy feature from frontier to block

* Revert "copy feature from frontier to block"

This reverts commit 5224ec963eb6a3ef1b6ab74d8ecbd44e4e42f285.

* temp fix

* unit test

* fix

* revert jtnn

* lint

* fix win64

* docstring fixes and doc indexing

* revert einsum in sparse bidecoder

* fix some examples

* lint

* fix due to some tediousness in remove_edges

* addresses comments

* fix

* more jtnn fixes

* fix

* remove server_count from ip_config.txt

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* Update dist_context.py

* fix lint.

* make it work for multiple spaces.

* update ip_config.txt.

* fix examples.

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* udpate

* update

* update

* update

* update

* update
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* add message passing user gude rst

* add nn user guide
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* fix OpenMP compatibility issues

* typo
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* remove unused code

* fix litn

* fix

* fix tests.

* fix.

* remove a test.

* make code work in the standalone mode.

* fix example.

* more fix.

* make DistDataloader work with num_workers=0

* fix DistDataloader tests.

* fix.

* fix lint.

* fix cleanup.

* fix test

* remove unnecessary code.

* remove tests.

* fix.

* fix.

* fix.

* fix example

* fix.

* fix.

* fix launch script.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* fix perf.

* fix.

* accelerate metis.

* fix lint.

* use gklib.

* fix perf.

* fix.

* update metis.

* update launch script

* handle synchronized API.

* fix.

* fix example.

* fix dataloader.

* temp fix.

* temp fix omp.

* distinguish roles.

* initialize iterator of DistDataloader correctly.

* check the correctness of launch script.

* move feature copy to sampler.

* measure mem/network copy time.

* remove

* Revert "measure mem/network copy time."

This reverts commit 86cefdc14b7815fcf5aad6496af912dba48e4aa6.

* fix.

* fix

* fix.

* fix cmake.

* disable metis in windows.

* disable metis tests in windows.

* remove test for multigraph.

* fix test.

* fix.

* fix cmake.

* fix.

* revert.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-115.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>