Commits · 186ef59283891fdaaf377c97da2f1872afbf5b7f · OpenDAS / dgl

13 Jul, 2021 1 commit
- [Feature] apply dgl.reorder() onto several node classification datase… (#3102) · 186ef592
  Rhett Ying authored Jul 13, 2021
```
* [Feature] apply dgl.reorder() onto several node classification datasets in DGL

* rebase on latest dgl.reorder_graph()
```
  186ef592
28 Jun, 2021 1 commit
- [Doc] fix inconsistent variable names (#3065) · 81456af8
  Kay Liu authored Jun 28, 2021
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
```
  81456af8
21 Jun, 2021 1 commit

[API] Standardize Subgraph APIs (#2929) · ff519f98

Mufei Li authored Jun 21, 2021



* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Fix subgraph tests

* Capture stdout for distributed test

* Capture stdout for distributed test

* Update

* Update

* Update

* Update subgraph.cc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

ff519f98

05 Jun, 2021 1 commit
- [Doc] changing of output dimension (#2981) · 895d6fff
  Kay Liu authored Jun 05, 2021
```
Co-authored-by: zhjwy9343 <6593865@qq.com>
```
  895d6fff
03 Jun, 2021 1 commit

[Doc] correct the matrix multiplication symbols (#2961) · 6383e649

Kay Liu authored Jun 03, 2021



* correct the matrix multiplication symbols

* modified dimensionality of linear
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

6383e649

03 May, 2021 1 commit

[Distributed] Distributed node embedding and sparse optimizer (#2733) · 975eb8fc

xiang song(charlie.song) authored May 03, 2021



* Draft for sparse emb

* add some notes

* Fix

* Add sparse optim for dist pytorch

* Update test

* Fix

* upd

* upd

* Fix

* Fix

* Fix bug

* add transductive exmpale

* Fix example

* Some fix

* Upd

* Fix lint

* lint

* lint

* lint

* upd

* Fix lint

* lint

* upd

* remove dead import

* update

* lint

* update unitest

* update example

* Add adam optimizer

* Add unitest and update data

* upd

* upd

* upd

* Fix docstring and fix some bug in example code

* Update rgcn readme
Co-authored-by: Ubuntu <ubuntu@ip-172-31-57-25.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>

975eb8fc

30 Mar, 2021 1 commit

[Distributed] Simplify distributed API (#2775) · e36c5db6

Da Zheng authored Mar 29, 2021



* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

e36c5db6

22 Mar, 2021 1 commit

[Bugfix] add default value for BlockSampler (#2771) · 1789972c

Hengrui Zhang authored Mar 22, 2021



* [Bugfix] add default value for BlockSampler

* [Doc] modify user_guide description about MultiLayerDropoutSample
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

1789972c

20 Feb, 2021 1 commit

[Doc] Tutorials re-organization (#2683) · 8a07ab77

Minjie Wang authored Feb 20, 2021

* reorg

* change titles

* rm some stale API doc; minor fix

* fix docs

* add warning

* rm new-tutorial run in ci

* lint

8a07ab77

08 Feb, 2021 1 commit
- [Doc] Update docs to motivate the use of set_batch_num_nodes and set_batch_num_edges (#2630) · 8ccb8206
  Tong He authored Feb 08, 2021
```
* fix doc

* update docstring for transformation on batch graph

* update cn guide

* fix format

* update rst
```
  8ccb8206
05 Feb, 2021 1 commit
- [Fix] Various Fix after Bug Bash (#2620) · 3ca52b1e
  Mufei Li authored Feb 05, 2021
```
* update

* Misc fix

* Update
```
  3ca52b1e
03 Feb, 2021 1 commit

[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset... · b1840f49

Mufei Li authored Feb 03, 2021


[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 (#2592)

* Update

* Update

* Update

* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Tong He <hetong007@gmail.com>

b1840f49

13 Jan, 2021 2 commits

[Doc] CN User Guide Chapter 7 (#2481) · c448e61b

zhjwy9343 authored Jan 13, 2021



* [Doc] Add Chapter 7

* [Doc] Add CN part 7, 7.1, 7.2, and 7.3

* [Doc] Add CN part 7, 7.1, 7.2, and 7.3

* [Doc] 1st round copyediting, 7, 7.1, 7.2, and 7.3, removing EN parts.

* [Doc] 2nd round copyediting.

* [Doc] 3rd round copyediting.

* [Doc] Copyedit with reviewers' comments.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

c448e61b

[Doc] user guide CN chapter 6 (#2452) · 31f65f03

zhjwy9343 authored Jan 13, 2021



* [Doc] Add 1st CN in chapter 6

* [Doc] Add 1st CN in chapter 6

* [Doc] Add 1st CN in chapter 6.1

* [Doc] Add 1st CN in chapter 6.1

* [Doc] Add 1st CN in chapter 6.2

* [Doc] Add CN in chapter 6.2

* [Doc] Add CN in chapter 6.3

* [Doc] Fix a code bug in chapter 6.3

* [Doc] Add CN in chapter 6.4, 6.5, and 6.6.

* [Doc] Add CN in chapter 6.4, 6.5, and 6.6，then remove EN parts.

* [Doc] revised 6.4, 6.5, and 6.6.

* [Doc] 2nd round of copyediting.

* Delete syn1.bin

Remove this unrelated file to this branch

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Add chapter 7 in index page

* [Doc] edit chapter 6 in PR

* [Doc] edit chapter 6 in PR

* [Doc] Copyediting with Murphy and Minjie's comments.

* [Doc] Fix doc line in the previous chapters.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

31f65f03

11 Jan, 2021 1 commit

[Doc] Update GraphDataLoader in our docs (#2504) · a9f8f258

Tong He authored Jan 11, 2021



* update graphdataloader in docs

* fix

* update examples

* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

a9f8f258

20 Dec, 2020 1 commit

[Fix] Avoid Overloading Nonzero for PyTorch Backend (#2434) · 492ad9be

Mufei Li authored Dec 20, 2020

* Update gatedgraphconv.py

* Update entity_classify.py

* Update data-process.rst

* Update reading_data.py

* Update data-process.rst

* Update utils.py

* Update knowledge_graph.py

* Update entity_classify.py

* Update rdf.py

* Update entity_classify_mb.py

* Update test_classify.py

* Update tensor.py

* Update sparse.py

* Update entity_classify_mp.py

* Update 6_line_graph.py

492ad9be

16 Dec, 2020 1 commit
- Remove details about message passing optimization (#2425) · 50f1f4ae
  Tianjun Xiao authored Dec 16, 2020
```
* remove details about message passing optimization

* address comments
```
  50f1f4ae
10 Dec, 2020 1 commit

[Doc] Add User Guide CN index page (#2413) · dc072dca

zhjwy9343 authored Dec 10, 2020



* [Doc] Add CN index page

* [Doc] Test table in contributor list

* [Doc] Test table in contributor list

* [Doc] Add table contents in contributor list

* [Doc] Add table contents in contributor list

* [Doc] Edit table contents in contributor list

* [Doc] Edit table contents in contributor list
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

dc072dca

09 Dec, 2020 1 commit

[Doc] user guide Chinese chapter 5 (#2384) · 35f27c73

zhjwy9343 authored Dec 09, 2020

* [Doc] Add CN chapter 5

* [Doc] Add CN 5.1

* [Doc] Add CN 5.2, 5.3, and 5.4 raw text

* [Doc] Add CN 5.2, 5.3, and 5.4 raw text

* [Doc] Put 5.1 CN parts

* [Doc] Put 5.2，5.3, and 5.4 raw CN parts

* [Doc] Fix linkage bugs.

* [Doc] 1st round of copyediting, Chapter5, 5.1, and part of 5.2

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 3rd round of copyediting.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 5th round of copyediting to Murphy's comments.

35f27c73

03 Dec, 2020 1 commit

[Doc] Hidden implementations that may cause confusion to the user. (#2378) · fcf11935

Xiangkun Hu authored Dec 03, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Hide implementations that may cause confusions to the user

fcf11935

19 Nov, 2020 2 commits

[WIP] Misc Fix (#2359) · 45e3e9af
Mufei Li authored Nov 19, 2020
```
* Update

* Update

* Update
```
45e3e9af

[Doc] Chinese User Guide chapter 1 - 4 (#2351) · b0a9d16f

zhjwy9343 authored Nov 19, 2020



* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* Update README.md

* [Fix] Temporary remove compgcn

* [Doc] Add CN user guide chapter2

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Section headers

* [Fix] Fix format errors

* [Fix] Fix format errors

* [Fix] Fix format errors

* [Doc] Add CN-EN EN-CN links

* [Doc] Add CN-EN EN-CN links

* [Doc] Copyedit chapter2

* [Doc] Copyedit chapter2

* [Doc] Remove EN in 2.1

* [Doc] Remove EN in chapter 2

* [Doc] Copyedit first 2 sections

* [Doc] Copyedit first 2 sections

* [Doc] copyedited chapter 2 CN

* [Doc] Add chapter 3 raw texts

* [Doc] Add chapter 3 preface and 3.1

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Remove EN parts

* [Doc] Copyediting 3.1

* [Doc] Copyediting 3.2 and 3.3

* [Doc] Proofreading 3.1 and 3.2

* [Doc] Proofreading 3.2 and 3.3

* [Doc] Add chapter 4 CN raw text.

* [Clean] Remove codes in other branches

* [Doc] Start to copyedit chapter 4 preface

* [Doc] copyedit CN section 4.1

* [Doc] Remove EN in User Guide Chapter 4

* [Doc] Copyedit chapter 4.1

* [Doc] copyedit cn chapter 4.2, 4.3, 4.4, and 4.5.

* [Doc] Fix errors in EN user guide graph feature and heterograph

* [Doc] 2nd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Sync] syncronize with the dgl master

* [Doc] edited after Minjie's comments, 1st round

* update cub
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

b0a9d16f

18 Nov, 2020 1 commit
- Update (#2354) · 9c08cd6b
  Mufei Li authored Nov 18, 2020
  
  9c08cd6b
30 Sep, 2020 1 commit

[Doc] Chinese User Guide chapter1 (#2240) · 808a3676

zhjwy9343 authored Sep 30, 2020



* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* Update README.md

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Fix] Temporary remove compgcn

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* update hash in 3rd party

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

808a3676