GitLab

* [DistTest] fix incorrect shell if statement

* fix incorrect use of dist.initialize()

* [Dist] enable to specify sort_etype for sample_etype_neighbours

* fix lint

* pass argument instead of env

* fix lint and doc string

* refine args

* remove unnecessary lines

* debug only

* debug add sort time log

* change interface

* fix typo
Co-authored-by: Xin Yao <xiny@nvidia.com>

* [Dist][BugFix] enable sampling on bipartite

* add comments for tests

* [Fix] sleep for a while when launching clients which will connect to multiple servers

* pre-allocate more ports

* no multiple partitions on single machine

* [Feature] long live server for multiple client groups

* generate globally unique name for DistTensor within DGL automatically

* [Fix] reduce error msg, refine fetch logic of available ports

* un-initialize client before sending shutdown request

* fix import error

* print connect failure log only in debug mode

* enable DMLC_LOG_DEBUG=1 in CI

* [Feature] enable TP::Receiver wait for any numbers of senders

* fix random unit test failure

* avoid endless future wait

* fix unit test failure

* fix seg fault when finalize wait in receiver

* [Feature] refactor sender connect logic and remove unnecessary sleeps in unit tests

* fix lint

* release RPCContext resources before process exits

* [Debug] TPReceiver wait start log

* [Debug] add log in get port

* [Debug] add log

* [ReDebug] revert time sleep in unit tests

* [Debug] remove sleep for test_distri,test_mp

* [debug] add more log

* [debug] add listen_booted_ flag

* [debug] restore commented code for queue

* [debug] sleep more in rpc_client

* restore change in tests

* Revert "restore change in tests"

This reverts commit 41a18926d181ec2517069389bfc41de2cc949280.

* Revert "[debug] sleep more in rpc_client"

This reverts commit a908e758eabca0a6ce62eb2e59baea02a840ac67.

* Revert "[debug] restore commented code for queue"

This reverts commit d3f993b3746e6bb6e2cc2f90204dd7e9461c6301.

* Revert "[debug] add listen_booted_ flag"

This reverts commit 244b2167d94942ff2a0acec8823b974975e52580.

* Revert "[debug] add more log"

This reverts commit 4b78447b0a575a824821dc7e25cca2246e6e30e2.

* Revert "[Debug] remove sleep for test_distri,test_mp"

This reverts commit e1df1aadcc8b1c2a0013ed77322ac391a8807612.

* remove debug code

* revert unnecessary change

* revert unnecessary changes

* always reset RPCContext when get started and reset all data

* remove time.sleep in dist tests

* fix lint

* reset envs before each dist test

* reset env properly

* add time sleep when start each server

* sleep for a while when boot server

* replace wait_thread with callback

* fix lint

* add dglconnect handshake check
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

[Feature] Add a HINT for the per edge type sampler of heterogeneous DistGraph that highlighting the etypes are sorted already. (#3260)

* pass cpp test

* distgraph use sorted edge flag.

* lint

* triger

* update test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>

* handle empty frontiers.

* fix lint.

* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* make heterogeneous find_edges

* add distributed EdgeDataLoader.

* fix.

* fix a bug.

* fix bugs.

* add tests on distributed heterogeneous graph sampling.

* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* Basic imple of heterogeneous on homogenenous sampling

* make pass

* Pass C++ test

* Add python test code

* lint

* lint

* Add MultiLayerEtypeNeighborSampler

* Add unitest for single machine dataloader

* Add dist dataloader test for edge type sampler

* Fix lint

* fix

* support for per etype sample

* Fix some bug and enable distributed training with per edge sample

* fix

* Now distributed training works

* turn off some mxnet

* turn off mxnet for some dist test

* fix

* upd

* upd according to the comments

* Fix

* Fix test and now distributed works.

* upd

* upd

* Fix

* Fix bug

* remove dead code.

* upd

* Fix

* upd

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* support hetero RGCN.

* fix.

* simplify code.

* sample_neighbors return heterograph directly.

* avoid using to_heterogeneous.

* compute canonical etypes in advance.

* fix tests.

* fix.

* fix distributed data loader for heterograph.

* use NodeDataLoader.

* fix bugs in partitioning on heterogeneous graphs.

* fix lint.

* fix tests.

* fix.

* fix.

* fix bugs.

* fix tests.

* fix.

* enable coo for distributed.

* fix.

* fix.

* fix.

* fix.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

* explicitly set the graph format.

* fix.

* fix.

* fix launch script.

* fix readme.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>

* add distributed in-degree and out-degree.

* update comments.

* fix a bug.

* add tests.

* add tests.

* fix a bug.

* fix docstring.

* update doc.

* fix

* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

* Distributed heterograph (#3)

* heterogeneous graph partition.

* fix graph partition book for heterograph.

* load heterograph partitions.

* update DistGraphServer to support heterograph.

* make DistGraph runnable for heterograph.

* partition a graph and store parts with homogeneous graph structure.

* update DistGraph server&client to use homogeneous graph.

* shuffle node Ids based on node types.

* load mag in heterograph.

* fix per-node-type mapping.

* balance node types.

* fix for homogeneous graph

* store etype for now.

* fix data name.

* fix a bug in example.

* add profiler in rgcn.

* heterogeneous RGCN.

* map homogeneous node ids to hetero node ids.

* fix graph partition book.

* fix DistGraph.

* shuffle eids.

* verify eids and their mappings when loading a partition.

* Id map from homogneous Ids to per-type Ids.

* verify partitioned results.

* add test for distributed sampler.

* add mapping from per-type Ids to homogeneous Ids.

* update example.

* fix DistGraph.

* Revert "add profiler in rgcn."

This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676.

* add tests for homogeneous graphs.

* fix a bug.

* fix test.

* fix for one partition.

* fix for standalone training and evaluation.

* small fix.

* fix two bugs.

* initialize projection matrix.

* small fix on RGCN.

* Fix rgcn performance (#17)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal>

* fix lint.

* fix lint.

* fix lint.

* fix lint.

* fix lint.

* fix lint.

* fix.

* fix test.

* fix lint.

* test partitions.

* remove redundant test for partitioning.

* remove commented code.

* fix partition.

* fix tests.

* fix RGCN.

* fix test.

* fix test.

* fix test.

* fix.

* fix a bug.

* update dmlc-core.

* fix.

* fix rgcn.

* update readme.

* add comments.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal>

* fix.

* fix.

* add div_int.

* fix.

* fix.

* fix lint.

* fix.

* fix.

* fix.

* adjust.

* move code.

* handle heterograph.

* return pytorch tensor in GPB.

* remove some tests in example.

* add to_block for distributed training.

* use distributed to_block.

* remove unnecessary function in DistGraph.

* remove distributed to_block.

* use pytorch tensor.

* fix a bug in ntypes and etypes.

* enable norm.

* make the data loader compatible with the old format.

* fix.

* add comments.

* fix a bug.

* add test for heterograph.

* support partition without reshuffle.

* add test.

* support partition without reshuffle.

* fix.

* add test.

* fix bugs.

* fix lint.

* fix dataset.

* fix for mxnet.

* update docstring.

* rename to floor_div

* avoid exposing NodePartitionPolicy and EdgePartitionPolicy.

* fix docstring.

* fix error.

* fixes.

* fix comments.

* rename.

* rename.

* explain IdMap.

* fix docstring.

* fix docstring.

* update docstring.

* remove the code of returning heterograph.

* remove argument.

* fix example.

* make GraphPartitionBook an abstract class.

* fix.

* fix.

* fix a bug.

* fix a bug in example

* fix a bug

* reverse heterograph sampling.

* temp fix.

* fix lint.

* Revert "temp fix."

This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381.

* compute norm.

* Revert "reverse heterograph sampling."

This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9.

* fix.

* move id_map.py

* remove check

* add more comments.

* update docstring.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal>

* fix.

* doesn't support EdgeDataLoader

* add test.

* fix.

* fix test.

* catch errors in the test.

* fix.

* fix error message

* add print.

* join the server processes.

* update test.

* fix test.

* rename get_data_size.

* remove g from DistTensor.

* remove g from DistEmbedding.

* clean up API of graph partition book.

* fix DistGraph

* fix lint.

* collect all part policies.

* fix.

* fix.

* support distributed sampler.

* remove partition.py

* remove server_count from ip_config.txt

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* Update dist_context.py

* fix lint.

* make it work for multiple spaces.

* update ip_config.txt.

* fix examples.

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* udpate

* update

* update

* update

* update

* update
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

* fix tests.

* fix.

* remove a test.

* make code work in the standalone mode.

* fix example.

* more fix.

* make DistDataloader work with num_workers=0

* fix DistDataloader tests.

* fix.

* fix lint.

* fix cleanup.

* fix test

* remove unnecessary code.

* remove tests.

* fix.

* fix.

* fix.

* fix example

* fix.

* fix.

* fix launch script.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

* 111

* 111

* fix

* 111

* fix

* 11

* fix

* lint

* Update __init__.py

* lint

* fix

* lint

* fix

* fix

* fix

* fix

* fix

* try fix

* try fix

* fix

* Revert "fix"

This reverts commit a0b954fd4e99b7df92b53db8334dcb583d6e1551.

* fixes.

* fix.

* fix test.

* fix exit.

* fix.

* fix

* fix

* lint

* lint

* lint

* fix

* Update .gitignore

* 111

* fix

* 111

* 111

* fff

* 1111

* 111

* 1325315

* ffff

* f???

* fff

* 1111

* 111

* fix

* 111

* asda

* 1111

* 11

* 123

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* spawn

* 1231231

* up

* 111

* fix

* fix

* Revert "fix"

This reverts commit 7373f95312fdcaa36d2fc330bf242339e89c045d.

* fix

* fix

* 1111

* fix

* fix tests

* start kvclient as early as possible.

* lint

* fix test

* lint

* 1111

* fix

* fix

* 111

* fix

* fix

* 1

* fix

* fix

* lint

* fix

* lint

* lint

* remove quit

* fix

* lint

* fix

* fix several

* lint

* fix minor

* fix

* lint
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Standalone can run

* fix

* Add save

* Fix

* Fix

* Fix

* Fix

* debug

* test

* test

* Fix

* Fix

* log

* Fix

* fix

* Profile

* auto sync grad

* update

* add test for unsupervised dist training

* upd

* Fix lr

* Fix update

* sync

* fix

* Revert "fix"

This reverts commit d5caa7398b36125f6d6e2c742a95c6ff4298c9e9.

* Fix

* unsupervised

* Fix

* remove debug

* Add test case for dist_graph find_edges()

* Fix

* skip tensorflow test for find_edges

* Update readme

* remove some test

* upd

* Update partition_graph.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* fix bugs.

* eval on both vaidation and testing.

* add script.

* update.

* update launch.

* make train_dist.py independent.

* update readme.

* update readme.

* update readme.

* update readme.

* generate undirected graph.

* rename conf_file to part_config

* use rsync

* make train_dist independent.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-115.us-west-2.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* fix tests in partition.

* fix DistGraph.

* fix without shared memory.

* fix sampling.

* enable distributed test.

* fix tests.

* fix a bug in shared-mem heterograph.

* print better error messages.

* fix.

* don't specify formats.

* fix.

* fix

* small fix.

* exit client

* update

* update

* update

* update

* update

* update

* update

* update test

* update

* update

* update

* update

* update

* update

* update

* update

* update

* add standalone mode

* add comments.

* add tests for sampling.

* fix.

* make the code to run the standalone mode

* fix

* fix

* fix readme.

* fix.

* fix test
Co-authored-by: Chao Ma <mctt90@gmail.com>

* run dist server in dgl.

* fix bugs.

* fix example.

* check environment variables and fix lint.

* fix lint

* add in_subgraph on DistGraph.

* check in more.

* fix test.

* add comments.

* fix test.

* update test.

* update.

* rename.

* update comment

* fix test

* optimize sampling neighbors from the local partition.

* fix minior bugs.

* fix lint

* overlap local sampling and remote sampling.

* fix.

* fix lint.

* fix a potential bug.
Co-authored-by: Chao Ma <mctt90@gmail.com>

* fix

* test1111

* 111

* 111

* fff

* lint

* 111

* lint

* lint

* 111

* fijx

* 111

* fix

* 111

* commit

* 111

* 111

* lint

* fix typo

* fix

* lint

* fix

* 111

* support mxnet

* support mxnet

* lint

* remove print

* fix

* fix test.

* fix test.

* fix test.

* try to fix an undetermistic error.
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>