GitLab

Co-authored-by: Hongyu Cai <h.tsai@hotmail.com>

* speed up batching

* more fix

* lint

* fix

* upd

* upd

* update

* upd

* upd

* upd

* fix

* lint

* lint

* pylint

* doc

* Update

* Update

* Update

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* Update README.md

* [Fix] Temporary remove compgcn

* [Doc] Add CN user guide chapter2

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Section headers

* [Fix] Fix format errors

* [Fix] Fix format errors

* [Fix] Fix format errors

* [Doc] Add CN-EN EN-CN links

* [Doc] Add CN-EN EN-CN links

* [Doc] Copyedit chapter2

* [Doc] Copyedit chapter2

* [Doc] Remove EN in 2.1

* [Doc] Remove EN in chapter 2

* [Doc] Copyedit first 2 sections

* [Doc] Copyedit first 2 sections

* [Doc] copyedited chapter 2 CN

* [Doc] Add chapter 3 raw texts

* [Doc] Add chapter 3 preface and 3.1

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Remove EN parts

* [Doc] Copyediting 3.1

* [Doc] Copyediting 3.2 and 3.3

* [Doc] Proofreading 3.1 and 3.2

* [Doc] Proofreading 3.2 and 3.3

* [Doc] Add chapter 4 CN raw text.

* [Clean] Remove codes in other branches

* [Doc] Start to copyedit chapter 4 preface

* [Doc] copyedit CN section 4.1

* [Doc] Remove EN in User Guide Chapter 4

* [Doc] Copyedit chapter 4.1

* [Doc] copyedit cn chapter 4.2, 4.3, 4.4, and 4.5.

* [Doc] Fix errors in EN user guide graph feature and heterograph

* [Doc] 2nd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Sync] syncronize with the dgl master

* [Doc] edited after Minjie's comments, 1st round

* update cub
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* support AVX512

* env DGL_CPU_INTEL_KERNEL_ENABLED=1

* env DGL_CPU_INTEL_KERNEL_LOG=1

* Add unittest test_spmm.cc
Co-authored-by: Izabela Mazur <izabela.mazur@intel.com>
Co-authored-by: Michal Szarmach <michal.szarmach@intel.com>

Review patch

In the bucket sampler, the length array should be recovered after random picking samples.

* multiple fixes

* fix CI

* fiddle

* revert stubs

* remove stubs

* poke

* remove linking of driver library

* minor
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* multiple fixes

* fix CI

* fiddle

* revert stubs

* upd

* upd

* unmerge

* unmerge
Co-authored-by: Quan Gan <coin2028@hotmail.com>

The l in "bool" is lost.
Co-authored-by: Zihao Ye <expye@outlook.com>

* add support for cuda 11

* fix inc bug in pytorch 1.8

* poke ci

* fix

* small fix

* try fix

* try fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Disable copying for anywhere but the GPU

* Remove unused import and remove references to transferring from the GPU from the docs

* Skip gpu test in cpu mode
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* check whether the original labels are valid

* add unit test for gin dataset

* bug of asscalar in mxnet<=1.6

* mxnet<=1.6 asscalar requires ndarray to be shaped (1,)

* skip gpu while testing datasets

* Update test_data.py

* test of gin dataset takes too much time

* sign for ogbn products, arxiv, mag

* texts

* fix

* update ogb folder readme

* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

[Performance] In HeteroNodeView, build arange on target device, instead of on CPU and copying it (#2266)

* Build arange on target device

* Utilize arange device in viewpy:HeteroNodeView.__call__

* Work around uint64 error in TF to_dlpack

* Restore else clause
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* Update docs

* Make non-default streams non-blocking

* Add async transferer class

* Add async ndarray copy interface

* Add python bindings

* Fix comment

* Add python class

* Fix linting issues

* Add python unit test

* Update python interface

* move async_transferer to cuda only directory

* Fix linting issue

* Move out of contrib

* Add doc strings

* Move test compute from backend

* Update comment

* Fix test naming

* Fix argument usage

* Wrap/unwrap backend parameters

* Move to dataloading

* Move to 'dataloading'

* Make GPU/CPU compatible

* Fix unit tests

* Add docs

* Use only backend interface for datamovement in unit test

* upd

* upd

* upd

* upd

* upd

* fix OpenMP compatibility issues

* typo

* partition

* misc

* fix typo

* num_parts=1

* import torch

* long

* print info

* print info

* print info

* upd

* remove debug code

* revert partition.py

* fix cut count

* fix cut count

* Revert "fix cut count"

This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.

* Revert "fix cut count"

This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.

* type of deprecate

* typo in deprecate info

* fix typo

* use cv for partitioning

* CE

* no message

* revert

* typo

* no message

* no message

* no message

* practice

* dmlc-core

* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Some of SAGEGraph equation has typos.

* [Bug] fix multiple bugs in JTNN example

* remove debug code

* add sparse and mutil gpu support

* update multi gpu

* update readme

* remove multi gpu

* add multiple gpus support
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* OMP pragma was added to support hetero_graph loop, as follows:
pragma omp parallel for

* OMP pragma will be enabled iff the gpu is used for
Co-authored-by: Zihao Ye <expye@outlook.com>

[Bugfix][Performance] Fix Column to copy 'self.index' to location of 'self.storage' only on read, and use kwargs. (#2267)

* Pass framework arguments to copy of frames

* Copy for subframe

* Fix mismatched contexts
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

An unexpected `AttributeError` exception is launched whenever the user defines `save_dir` on `DGLDataset` instantiation and uses `self._save_dir`  within `has_cache` method.
This commit fixes the issue.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* Update README.md

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Fix] Temporary remove compgcn

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* update hash in 3rd party

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* udp

* add test

* udp

* fix mxnet