GitLab

* alternative

* fix

* remove_todo

* blabl

* ablabl
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* check if stats file exists, if not create one before parmetis run

* correct the typo error and correctly use constants.GRAPH_NAME

All tasks completed.

* [Dist] enable access DistGraph.edges via canonical etype

* refine code

* refine test

* refine code

* [Misc] clang-format auto fix.

* blabla

* nolint

* blabla
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Sparse] Add sparse matrix C++ implementation

* Add documentation

* Update

* Minor fix

* Move Python code to dgl/mock_sparse2

* Move headers to include

* lint

* Update

* Add dgl_sparse directory

* Move src code to dgl_sparse

* Add __init__.py in tests to avoid naming conflict

* Add dgl sparse so in Jenkinsfile

* Complete docstring & SparseMatrix basic op

* lint

* Disable win tests

* blabla

* more

* blabla

* blabla

* ablabla

* blabla
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Misc] clang-format auto fix.

* blabla

* ablabla

* blabla
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* replace

* blabla

* balbla

* blabla
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* param

* brief

* note

* return

* tparam

* brief2

* file

* return2

* return

* blabla

* all
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* add bf16 specializations

* remove SWITCH_BITS

* enable amp for bf16

* remove SWITCH_BITS for cpu kernels

* enbale bf16 based on CUDART

* fix compiling for sm<80

* fix cpu build

* enable unit tests

* update doc

* disable test for CUDA < 11.0

* address comments

* address comments

* shortest dist

* update

* address issues

* update

* fix indent

* lint

* fix indent

* [Misc] clang-format auto fix.

* manual

* manual
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Misc] clang-format auto fix.

* fix

* manual
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* replace

* more

* file

* change
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Misc] clang-format auto fix.

* manual
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Dist] deprecate etype and always use canonical etype for partition and load

* enable canonical etypes in dist part pipeline

* resolve rebase conflicts

* fix lint

* fix test failure

* throw exception if outdated part config is loaded

* refine

* refine

* revert unnecessary change

* fix typo

* edgewise mpops

* formatting

* black formatting

* isort

* fix lint

* remove typing module; address comments

* fix gpu ut; rename test file

* remove dependecy of load_partition_book in change tool

* fix issue

* fix issue
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>

* [Misc] clang-format auto fix.

* manual

* manual

* manual

* manual

* todo

* fix
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Misc] clang-format auto fix.

* fix
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* get device pointers

* change if condition to IsPinned

* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

* codes for citation2

* format slight adjustment

* adjust format in models.py

* now it runs normally for all datasets.

* add comments; adjust code order.

* adjust indenting.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Misc] clang-format auto fix.

* manual
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* clang-format

* manul

* manul

* manual
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* Add files via upload

This file will contain several utility modules for Graph Transformer. DegreeEncoder has been implemented in this file now.

* Update graph_transformer.py

* Update nn-pytorch.rst

Add graph_transformer.DegreeEncoder in Utility Modules

* Update test_nn.py

* Update __init__.py

* Update graph_transformer.py

* Update test_nn.py

* Update graph_transformer.py

fix unused import

* Update graph_transformer.py

add module doc-string

* Update graph_transformer.py

* Update graph_transformer.py
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

Signed-off-by: Serge Panev <spanev@nvidia.com>
Signed-off-by: Serge Panev <spanev@nvidia.com>

* add save/load for distributed  optimizer
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>

Merging this PR to the master branch

* add a learned laplacian positional encoder

* leverage black to beautify the python code

* refine according to dongyu's comments
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

* sample neighbors with masks

* oops

* refactor again

* remove

* remove debug code

* rename macro

* address comments

* more stuff

* remove

* fix

* try fix unit test

* oops

* fix test

* oops

* change name

* rename a lot of stuff

* oops

* ugh

* misc fixes

* lint

* address a lot of comments

* lint

* lint

* fix

* that was silly

* fix

* fix

* fix

* oops

* sample neighbors with masks

* oops

* refactor again

* remove

* remove debug code

* rename macro

* address comments

* address comment

* address comments

* rename a lot of stuff

* oops

* Update distributed-preprocessing.rst

* Another typo for the writes edge type

* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

* codes for citation2

* format slight adjustment

* adjust format in models.py

* now it runs normally for all datasets.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Model] Heterogeneous graph support for GNNExplainer (#1)

* add HeteroGNNExplainer

* GNNExplainer for heterogeenous graph

* fix typo

* variable name cleanup

* added HeteroGNNExplainer test

* added doc indexing for HeteroGNNExplainer

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update gnnexplainer.py

Change DGLHeteroGraph to DGLGraph, and specified parameter inputs

* Added ntype parameter to the explainer_node call

* responding to @mufeili's comment regarding restoring empty lines at appriopiate places to be consistent with existing practices

* responding to @mufeili's comment regarding restoring empty lines at appriopiate places that were missed in the last commit

* docstring comments added based on @mufeili suggestions

* indorporated @mufeili requested changes related to docstring model declaration.

* example model and test_nn.py added for explain_graphs

* explain_nodes fixed and fixed the way hetero num nodes and edges are handled

* white spaces removed

* lint issues fixed

* explain_graph model updated

* explain nodes model updated

* minor fixes related to gpu compatability

* cuda support added

* simplify WIP

* _init_masks for ennexplainer updated to match heterographs

* Update

* model simplified and docstring comments updated

* nits: docstring udpated

* lint check issues updated

* lint check updated

* soem formatting updated

* disabling int32 testing for GNNExplainer

* Update
Co-authored-by: Kangkook Jee <kangkook.jee@gmail.com>
Co-authored-by: ahadjawaid <94938815+ahadjawaid@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Kunal Mukherjee <kunmukh@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

* Update

* Update

* Update

* Update

* Update test_transform.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>