GitLab

* fix breakline in fakenews.py

* fix inconsistent argument name

* modify incorrect example and deprecated graph type

* modify docstring and example in knn_graph

* fix incorrect node type
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* add a warning for chebconv

* fix and docstrings

* update bgnn

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Update aug.py

* Update aug.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* fix faiss issue on k 3

* Add Hilander paper link
Co-authored-by: Tong He <hetong007@gmail.com>

* add hilander model implementation draft

* use focal loss

* fix

* change data root

* add necessary scripts

* update download links

* update

* update example table

* fix

* update readme with numbers

* add empty folder

* only eval at the end

* set up hilander

* inform results may fluctuate

* address comments
Co-authored-by: sneakerkg <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-212.us-east-2.compute.internal>

* fix bugs in partitioning on heterogeneous graphs.

* fix.

* fix.

* fix example.

* fix.

* fix test.

* fix.

* fix.

* fix.

* fix tests.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

* Fix example datasplitting

* Remove left-over split parameter

* Remove unused parameter

* Set epoch when using multiple GPUs
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update docstrings and tidy code

* add docs

* address comments

* Update __init__.py

* address comments

* csr and csc creation

* fix

* fix

* fixes to adj transpose

* fine

* raise error if indptr did not match number of nodes

* fix

* huh?

* oh
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: maqy1995 <maqingyun0718>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Fix example

* Remove register_data_args and revert  to dataset
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add seal example

* 1. add paper infomation in examples/README
2. adjust codes
3. option test

* use latest `to_simple` to replace coalesce graph function

* remove outdated codes

* remove useless comment

* Node2vec
1.implement node2vec random walk c++ op
2.implement node2vec model
3.implement node2vec example

* add CMakeLists file modify

* refine c++ codes

* refine c++ codes

* add missing whitespace

* refine python codes

* add codes

* add node2vec_impl.h

* fix codes

* fix code style problem

* fixes

* remove

* lots of changes

* add benchmark

* fixes
Co-authored-by: smilexuhc <smile.xuhc@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Fix subgraph tests

* Capture stdout for distributed test

* Capture stdout for distributed test

* Update

* Update

* Update

* Update subgraph.cc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* add.

* fix.

* fix.

* fix.

* fix.

* add tests.

* support node split and edge split.

* support 1 partition.

* add tests.

* fix.

* fix test.

* use hierarchical partition.

* add check.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-57.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>

Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

* Update GCN on ogbn-arxiv

* Add GAT for ogbn-arxiv

* Update README.md

* Update GAT on ogbn-arxiv

* Update README.md

* Update README

* Update README.md

* Update README.md

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Add examples for ogbn-products.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-products.

* Update examples for ogbn-products.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-proteins.

* Update examples for ogbn-products.

* Update examples for ogbn-proteins.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-proteins.

* Update README.md

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* reformat and update performance

* Update README.md

* Fix typos
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

[Performance] Perform to_block on the GPU when the dataloader is created with a GPU `device`. (#3016)

* add output device for dataloading

* Update dataloader

* Get sampler device from dataloader

* Fix line length

* Update examples

* Fix to_block GPU for empty relation types

* Handle the case where the DistGraph has None for the underlying graph
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* Split from NCCL PR

* Fix type in comment

* Expand documentation for sparse_all_to_all_push

* Restore previous behavior in example

* Re-work optimizer to use NCCL based on gradient location

* Allow for running with embedding on CPU but using NCCL for gradient exchange

* Optimize single partition case

* Fix pylint errors

* Add missing include

* fix gradient indexing

* Fix line continuation

* Migrate 'first_step'

* Skip tests without enough GPUs to run NCCL

* Improve empty tensor handling for pytorch 1.5

* Fix indentation

* Allow multiple NCCL communicator to coexist

* Improve handling of empty message

* Update python/dgl/nn/pytorch/sparse_emb.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Update python/dgl/nn/pytorch/sparse_emb.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Keepy empty tensor dimensionaless

* th.empty -> th.tensor

* Preserve shape for empty non-zero dimension tensors

* Use shared state, when embedding is shared

* Add support for gathering an embedding

* Fix typo

* Fix more typos

* Fix backend call

* Use NodeDataLoader to take advantage of ddp

* Update training script to share memory

* Only squeeze last dimension

* Better handle empty message

* Keep embedding on the target device GPU if dgl_sparse if false in RGCN example

* Fix typo in comment

* Add asserts

* Improve documentation in example
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Make multigpu graphsage use whole datset

* Specify queeze dimension

* Remove squeeze dimension
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* reorg and expose dgl.geometry

* fix lint

* fix test

* fix

* tahin

* readme

* readme

* readme

* readme

* readme

* readme

* main

* main

* new_line

* update
Co-authored-by: zhjwy9343 <6593865@qq.com>

corrected docstring, the model uses two R-GCN layers
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* explicitly set the graph format.

* fix.

* fix.

* fix launch script.

* fix readme.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>

* add lda model

* tweak latent dirichlet allocation

* Update README.md

* Update README.md

* update example index

* update header

* minor tweak

* add example test

* update doc

* Update README.md

* Update README.md

* add partial_fit for free

* Update examples/pytorch/lda/lda_model.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update examples/pytorch/lda/example_20newsgroups.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update lda_model.py

* bugfix torch Gamma uses rate parameter
Co-authored-by: Yifei Ma <yifeim@amazon.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* standardizing thread_wrapped_func

* lints

* Update __init__.py

* [example] label propagation and correct&smooth

* update

* update

* update

* update

* [docs] add speed for c&s

* update

* [fix] remove gat&consistent with the author's code

* [feat] multi-type adj norm supported

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* graphsaint

* graphsaint

* graphsaint

* graphsaint

* fixed the model

* fixed some bugs

* fixed the computing of normalization and updated the results

* fixed some bugs and updated the results

* Update utils.py

* Update train_sampling.py

* Update train_sampling.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* pytorch lightning initial examples

* revert most changes in dataloader to favor #2886.

* address comments

* Draft for sparse emb

* add some notes

* Fix

* Add sparse optim for dist pytorch

* Update test

* Fix

* upd

* upd

* Fix

* Fix

* Fix bug

* add transductive exmpale

* Fix example

* Some fix

* Upd

* Fix lint

* lint

* lint

* lint

* upd

* Fix lint

* lint

* upd

* remove dead import

* update

* lint

* update unitest

* update example

* Add adam optimizer

* Add unitest and update data

* upd

* upd

* upd

* Fix docstring and fix some bug in example code

* Update rgcn readme
Co-authored-by: Ubuntu <ubuntu@ip-172-31-57-25.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>

* [Example] add implementation of grace

* [Doc] add grace in the index file

* fix

* fix typos
Co-authored-by: Mufei Li <mufeili1996@gmail.com>