1. 02 Jun, 2019 1 commit
    • Minjie Wang's avatar
      [Graph] Add API to convert graph to simple graph (#587) · 01a4cc5b
      Minjie Wang authored
      * to simple
      
      * WIP: multigraph flag
      
      * graph index refactor; pass basic testing
      
      * graph index refactor; pass basic testing
      
      * fix bug in to_simple; pass torch test
      
      * fix mx utest
      
      * fix example
      
      * fix lint
      
      * fix ci
      
      * poke ci
      
      * poke ci
      
      * WIP
      
      * poke ci
      
      * poke ci
      
      * poke ci
      
      * change ci workspace
      
      * poke ci
      
      * poke ci
      
      * poke ci
      
      * poke ci
      
      * delete ci
      
      * use enum for multigraph flag
      01a4cc5b
  2. 25 May, 2019 1 commit
  3. 23 May, 2019 1 commit
  4. 08 Apr, 2019 1 commit
    • Da Zheng's avatar
      [Feature] Create shared memory graph store. (#468) · bfdd1eaa
      Da Zheng authored
      * accelerate gcn_ns.
      
      * add timing.
      
      * run infer with whole graph.
      
      * distributed gcn_ns.
      
      * reconstruct gcn_ns.
      
      * minor fix.
      
      * change graphsage_cv for numa.
      
      * fix #OMP threads.
      
      * accelerate graphsage_cv.
      
      * fix a weird bug.
      
      * add profiler in graphsage_cv.
      
      * accelerate graphsage_cv.
      
      manually aggregate neighbors' embeddings with pull.
      
      * load csr directly in gcn_ns_sc.
      
      * parallel sort for graph index.
      
      * Revert "parallel sort for graph index."
      
      This reverts commit 86fe2c7117fe5e56b0d481b39849c258b166945b.
      
      * run gcn_ns_sc on GPUs.
      
      * acc gcn_cv_sc.
      
      * change gcn_cv for numa.
      
      * fix gcn_cv to use numa and gpu.
      
      * improve graphsage_cv to use numa and gpu.
      
      * improve gcn_ns.
      
      * improve graphsage_cv.
      
      * init shared memory graph store.
      
      * fix.
      
      * enable init ndata.
      
      * improve tests.
      
      * add bidirectional communication.
      
      * link to rt.
      
      * fix compilation error.
      
      * fix shared memory init.
      
      * use MessageQueue for inter-process communication.
      
      * reconstruct immutable graph csr.
      
      * fix gcn.
      
      * load csr to shared memory.
      
      * fix minor bugs.
      
      * add comments.
      
      * refactor SharedMemory.
      
      * fix bugs in ImmutableGraph.
      
      * create CSR graph from shared memory.
      
      * add more test for loading a csr graph.
      
      * terminate graph store properly.
      
      * allow initializing ndata in the graph store server.
      
      * use RPC for inter-process communication.
      
      * a script for loading a graph.
      
      * allow customizing port.
      
      * list all ndata and edata.
      
      * support dtype.
      
      * reorganize SharedMemoryGraphStore.
      
      * fix ndata shape.
      
      * reconstruct gcn_ns.
      
      * print info.
      
      * set omp in gcn_ns.
      
      * reset sampling examples.
      
      * fix lint.
      
      * fix lint.
      
      * reset gcn.
      
      * disable shared memory in windows.
      
      * fix.
      
      * fix.
      
      * reset changes.
      
      * revert nodeflow changes.
      
      * fix cmake.
      
      * fix test.
      
      * fix test.
      
      * fix test.
      
      * fix test.
      
      * add comments.
      
      * fix test.
      
      * move vector out.
      
      * fix lint.
      
      * fix lint.
      
      * move SharedMemory.
      
      * update cmake.
      
      * update comment.
      
      * fix comments.
      
      * Revert "update cmake."
      
      This reverts commit 592445e37077f70a6e3f2e5245f9a3d086b04f3b.
      
      * update cmake.
      
      * add comments.
      
      * rename.
      
      * change the comment.
      
      * fix a bug.
      
      * rename.
      
      * add comments.
      
      * add comments.
      
      * add init_edata.
      
      * rewrite memory alloc.
      
      * move vector to CSR.
      
      * fix.
      
      * init data.
      
      * Revert "init data."
      
      This reverts commit 2b217b9553911b7dd84a9f1d9b68430b5aa18e23.
      
      * init data.
      
      * init new columns correctly.
      bfdd1eaa
  5. 17 Jan, 2019 1 commit
    • Da Zheng's avatar
      [Feature] Reimplement Immutable graph index in DGL (#342) · 929742b5
      Da Zheng authored
      * init.
      
      * it's compiled.
      
      * add immutable graph constructor.
      
      * add immutable graph API.
      
      * fix.
      
      * impl get adjacency matrix.
      
      * fix.
      
      * fix graph_index from scipy matrix.
      
      * add neighbor sampling.
      
      * remap vertex ids.
      
      * fix.
      
      * move sampler test.
      
      * fix tests.
      
      * add comments
      
      * remove mxnet-specific immutable graph.
      
      * fix.
      
      * fix lint.
      
      * fix.
      
      * try to fix windows compile error.
      
      * fix.
      
      * fix.
      
      * add test.
      
      * unify Graph and ImmutableGraph.
      
      * fix bugs.
      
      * fix compile.
      
      * move immutable graph.
      
      * fix.
      
      * remove print.
      
      * fix lint.
      
      * fix
      
      * fix lint.
      
      * fix lint.
      
      * fix test.
      
      * fix comments.
      
      * merge GraphIndex and ImmutableGraphIndex.
      
      * temp fix.
      
      * impl GetAdj.
      
      * fix lint
      
      * fix.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * use csr only for readonly graph.
      
      * Revert "use csr only for readonly graph."
      
      This reverts commit 8e24bb033af8504531b22849de5b7567b168e0d5.
      
      * remove code.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * fix.
      
      * address comments.
      
      * fix for comments.
      
      * fix comments.
      
      * revert.
      
      * move test_graph_index to compute.
      
      * fix.
      
      * fix.
      
      * impl GetAdj for coo.
      
      * fix.
      
      * fix tests.
      
      * address comments.
      
      * address comments.
      
      * fix comment.
      
      * address comments.
      
      * use lambda.
      
      * other comments.
      
      * address comments.
      
      * modify the semantics of edges.
      
      * fix order.
      
      * use DGLIdIter
      
      * fix.
      
      * remove NotImplemented.
      
      * revert some code.
      929742b5