GitLab

* slice dstdata from srcdata within nn module

* a bunch of fixes

* add comment

* fix gcmc layer

* repr for blocks

* fix

* fix context

* fix

* do not copy internal columns

* docstring

* metis for hetero

* fix partition

* save mem.

* save mem.

* reduce mem

* fix test

* fix lint

* fix test

* fix.

* fix.

* fix.

* fix.

* fix lint.

* fix backend operator.

* fix tensorflow operators.

* fix.

* revert change in mxnet operator.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

* code

* joint_union

* joint union pass all test

* test case for test_transform

* upd

* lint

* lint

* Fix

* list

* Fix

* Fix

* update to_bidirected impl

* Fix

* Fix

* upd

* remove joint_union
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* To simple

* lint

* upd

* more test

* fix

* Fix

* Fix

* add share edata

* doc

* Fix

* Fix

* Fix

* Fix

* lint

* lint

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* reverse

* Add more test

* Fix lint

* Fix

* move to transform

* upd

* upd

* upd

* Add more test

* lint

* Fix

* Fix doc

* Fix

* test

* doc

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* line graph

* update docstring

* Add test and compile OK

* Add python API

* Fix linty

* Fix

* Fix

* upd

* upd

* Fix

* merge

* Fix

* fix

* upd

* lint

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Matrix to simple

* Pass test

* new impl

* Fix test

* Fix lint

* trigger

* upd

* Fix comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* add cub; array cumsum

* CSRSliceRows

* fix warning

* operator << for ndarray; CSRSliceRows

* add CSRIsSorted

* add csr_sort

* inplace coosort and outplace csrsort

* WIP: coo is sorted

* mv cuda_utils

* add AllTrue utility

* csr sort

* coo sort

* coo2csr for sorted coo arrays

* CSRToCOO from sorted

* pass tests for the new kernel changes

* cannot use inplace sort

* lint

* try fix msvc error

* Fix g.copy_to and g.asnumbits; ToBlock no longer uses CSC

* stash

* revert some hack

* revert some changes

* address comments

* fix

* fix to_block unittest

* add todo note

* add constraint.

* fix bugs.

* temp fix.

* fix lint

* add balance_ntypes and balance_edges

* add comments.

* fix.

* fix

* Fix bugs in partitioning.

* add comment.

* fix lint.

* fix test.

* add more tests.

* simplify the fix

* fix.

* add reorder immutable graph.

* add python API.

* add reorder for csr.

* remove gk version.

* fix

* add cpp test.

* bug fixes

* fix tests.

* fix bugs and add check

* fix test.

* add omp.

* add comments.

* add coo reorder.

* fix a bug.

* handle reorder for different graph structues.

* fix lint.

* fix.

* add original ids.

* reshuffle nodes before metis partition.

* inner nodes are in contiguous Id range.

* reshuffle nodes/edges when partitioning.

* load partition return graph partition book.

* use inner_node/inner_edges

* add and test range partition book.

* count inner_edge correctly.

* fix lint.

* fix lint.

* fix lint.

* fix errors.

* fix errors.

* fix for TF.

* fix.

* fix.

* change docstring.

* support logical and.

* add comments.

* avoid copy.

* fix

* update docstring.

* fix a bug.

* add range search.

* fix

* fix a bug.

* add more tests.

* load graph partition book.

* support shared memory for range partition book.

* fix a bug.

* fix.

* fix lint.

* remove check

* fix test.

* remove num_nodes and num_edges

* fix lint.

* fix graph partition book.

* address comments.

* use makedirs.

* fix compile
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>

* 111

* 111

* lint

* lint

* lint

* lint

* fix

* lint

* try

* fix

* lint

* lint

* test

* fix

* ttt

* test

* fix

* fix

* fix

* mxnet

* 111

* fix 64bits computation

* pylint

* roll back

* fix

* lint

* fix hetero_from_relations

* remove index_dtype in to_homo and to_hetero

* fix

* fix

* fix

* fix

* remove default

* fix

* lint

* fix

* fix error message

* fix error

* lint

* macro dispatch

* try

* lint

* remove nbits

* error message

* fix

* fix

* lint

* lint

* lint

* fix

* lint

* fix

* fix random walk

* lint

* lint

* fix

* fix

* fix

* lint

* fix

* lint
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update

* Update

* Update

* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [BUG] Another fix on remove edges when all edges are removed

* fix mxnet

* fix is_multigraph in from_coo.

* add tests for partition.

* fix.

* Revert "add tests for partition."

This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc.

* fix everywhere from_scipy_sparse_matrix is used.

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore

* make graph symmetric

* call gklib routine.

* use gklib version except in windows.

* minor errors.

* fix test.

* update doc.

* fix a compile error.

* fix.

* add comments for the new C API.

* fix a bug.

* address comments.

* fix compile error.

* fix comment.

* compact

* prealloc memory for hashtable

* Fix

* upd

* Reduce memory

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* add metis.

* add test.

* construct partition id.

* link to METIS github repo.

* update metis.

* add a tool for partitioning a graph.

* update metis.

* update.

* update.

* fix metis.

* fix lint

* fix indent.

* another way of building metis.

* disable metis in windows.

* test windows

* fix.

* disable metis for windows properly.

* fix for tensorflow.

* skip test for gpu.

* make graph symmetric

* address comments.

* more comments.

* fix compile

* fix a bug.

* add test.

* change the default #hops of HALO nodes.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>

* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data

* [WIP] PinSAGE operators

* moved the edge remapping mess into C

* some docstrings

* lint

* lint x2

* lint x3

* skip gpu test on topk

* extend pinsage to any metapath

* lint x4

* addresses #1265

* add always_preserve (fixes #1266) and fix a silly bug

* disable gpu test on compaction

* lint

* fix a horrible bug and add more tests

* lint

* addresses comments

* lint

* bugfix

* addresses comments
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* WIP: working on random choices

* light slice

* basic CPU impl

* add python binding; fix CreateFromCOO and CreateFromCSR returning unitgraph

* simple test case works

* fix bug in slicing probability array

* fix bug in getting the correct relation graph

* fix bug in creating placeholder graph

* enable omp

* add cpp test

* sample topk

* add in|out_subgraph

* try fix lint; passed all unittests

* fix lint

* fix msvc compile; add sorted flag and constructors

* fix msvc

* coosort

* COOSort; CSRRowWiseSampling; CSRRowWiseTopk

* WIP: remove DType in CSR and COO; Restrict data array to be IdArray

* fix all CSR ops for missing data array

* compiled

* passed tests

* lint

* test sampling out edge

* test different per-relation fanout/k values

* fix bug in random choice

* finished cpptest

* fix compile

* Add induced edges

* add check

* fixed bug in sampling on hypersparse graph; add tests

* add ascending flag

* in|out_subgraph returns subgraph and induced eid

* address comments

* lint

* fix

* get subgraph with halo.

* add partition function.

* add comment.

* parallel partition.

* fix a compilation error.

* fix lint error.

* address comments.

* add comments.

* fix for TF.

* add transform

* lint

* lint

* fix

* fixmx

* fix

* add test

* fix typo

* fix default num_classes

* change to non-inplace operation

* fix lint

* fix

* fix

* fix lint

* fixlint

* add transform

* lint

* lint

* fix

* fixmx

* fix

* add test

* fix typo

* fix default num_classes

* change to non-inplace operation

* fix lint

* fix

* gat

* upd

* upd sage

* upd

* upd

* upd

* upd

* upd

* add gmmconv

* upd ggnn

* upd

* upd

* upd

* upd

* add citation examples

* add README

* fix cheb

* improve doc

* formula

* upd

* trigger

* lint

* lint

* upd

* add test for transform

* add test

* check

* upd

* improve doc

* shape check

* upd

* densechebconv, currently not correct (?)

* fix cheb

* fix

* upd

* upd sgc-reddit

* upd

* trigger

* to_bidirected

* to_bidirected

* Fix style

* Fix

* Update

* Fix

* Fix

* Update

* Add examples

* to simple

* WIP: multigraph flag

* graph index refactor; pass basic testing

* graph index refactor; pass basic testing

* fix bug in to_simple; pass torch test

* fix mx utest

* fix example

* fix lint

* fix ci

* poke ci

* poke ci

* WIP

* poke ci

* poke ci

* poke ci

* change ci workspace

* poke ci

* poke ci

* poke ci

* poke ci

* delete ci

* use enum for multigraph flag

* test basics

* batched graph & filter, mxnet filter fix

* frame and function; bugfix

* test graph adj and inc matrices

* fixing start = 0 for mxnet

* test index

* inplace update & line graph

* multi send recv

* more tests

* oops

* more tests

* removing old test files; readonly graphs for mxnet still kept

* modifying test scripts

* adding a placeholder for pytorch to reserve directory

* torch 0.4.1 compat fixes

* moving backend out of compute to avoid nose detection

* tests guide

* mx sparse-to-dense/sparse-to-numpy is buggy

* oops

* contribution guide for unit tests

* printing incmat

* printing dlpack

* small push

* typo

* fixing duplicate entries that causes undefined behavior

* move equal comparison to backend

* reverse a graph

* Reverse a graph

* Fix

* Revert "Fix"

This reverts commit 1728826b4f3a083b76dfc0fdecd2bbf943a971b2.

* Fix

* Fix

* Delete vcs.xml

* Delete Project_Default.xml

* Fix

* Fix

* Fix

* Remove outdated test

* Reorg transform and update reverse (#2)

* Reorg transform and update reverse

* Fix doc and test

* Update test

* Resolve conflict

* CI oriented fix

* Remove outdated import

* Fix import

* Fix import

* define __all__ for wildcard imports

* Fix import

* Address circular imports

* Fix

* Fix test case

* Fix

* Fix

* Remove unused import

* Fix

* Fix

* Fix