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OpenDAS
dgl
Commits
f6fa920d
"docs/git@developer.sourcefind.cn:renzhc/diffusers_dcu.git" did not exist on "914c513ee07026299614f30804e0e28bf079a459"
Unverified
Commit
f6fa920d
authored
Dec 13, 2023
by
Rhett Ying
Committed by
GitHub
Dec 13, 2023
Browse files
[GraphBolt] Add functional name into docstring (#6739)
parent
06dc1dc4
Changes
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8 changed files
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73 additions
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62 deletions
+73
-62
python/dgl/graphbolt/base.py
python/dgl/graphbolt/base.py
+2
-0
python/dgl/graphbolt/feature_fetcher.py
python/dgl/graphbolt/feature_fetcher.py
+24
-24
python/dgl/graphbolt/impl/in_subgraph_sampler.py
python/dgl/graphbolt/impl/in_subgraph_sampler.py
+2
-0
python/dgl/graphbolt/impl/neighbor_sampler.py
python/dgl/graphbolt/impl/neighbor_sampler.py
+4
-0
python/dgl/graphbolt/impl/uniform_negative_sampler.py
python/dgl/graphbolt/impl/uniform_negative_sampler.py
+2
-0
python/dgl/graphbolt/minibatch_transformer.py
python/dgl/graphbolt/minibatch_transformer.py
+21
-19
python/dgl/graphbolt/negative_sampler.py
python/dgl/graphbolt/negative_sampler.py
+9
-10
python/dgl/graphbolt/subgraph_sampler.py
python/dgl/graphbolt/subgraph_sampler.py
+9
-9
No files found.
python/dgl/graphbolt/base.py
View file @
f6fa920d
...
...
@@ -104,6 +104,8 @@ class CopyTo(IterDataPipe):
"""DataPipe that transfers each element yielded from the previous DataPipe
to the given device.
Functional name: :obj:`copy_to`.
This is equivalent to
.. code:: python
...
...
python/dgl/graphbolt/feature_fetcher.py
View file @
f6fa920d
...
...
@@ -16,7 +16,30 @@ __all__ = [
@
functional_datapipe
(
"fetch_feature"
)
class
FeatureFetcher
(
MiniBatchTransformer
):
"""A feature fetcher used to fetch features for node/edge in graphbolt."""
"""A feature fetcher used to fetch features for node/edge in graphbolt.
Functional name: :obj:`fetch_feature`.
Parameters
----------
datapipe : DataPipe
The datapipe.
feature_store : FeatureStore
A storage for features, support read and update.
node_feature_keys : List[str] or Dict[str, List[str]]
Node features keys indicates the node features need to be read.
- If `node_features` is a list: It means the graph is homogeneous
graph, and the 'str' inside are feature names.
- If `node_features` is a dictionary: The keys should be node type
and the values are lists of feature names.
edge_feature_keys : List[str] or Dict[str, List[str]]
Edge features name indicates the edge features need to be read.
- If `edge_features` is a list: It means the graph is homogeneous
graph, and the 'str' inside are feature names.
- If `edge_features` is a dictionary: The keys are edge types,
following the format 'str:str:str', and the values are lists of
feature names.
"""
def
__init__
(
self
,
...
...
@@ -25,29 +48,6 @@ class FeatureFetcher(MiniBatchTransformer):
node_feature_keys
=
None
,
edge_feature_keys
=
None
,
):
"""
Initlization for a feature fetcher.
Parameters
----------
datapipe : DataPipe
The datapipe.
feature_store : FeatureStore
A storage for features, support read and update.
node_feature_keys : List[str] or Dict[str, List[str]]
Node features keys indicates the node features need to be read.
- If `node_features` is a list: It means the graph is homogeneous
graph, and the 'str' inside are feature names.
- If `node_features` is a dictionary: The keys should be node type
and the values are lists of feature names.
edge_feature_keys : List[str] or Dict[str, List[str]]
Edge features name indicates the edge features need to be read.
- If `edge_features` is a list: It means the graph is homogeneous
graph, and the 'str' inside are feature names.
- If `edge_features` is a dictionary: The keys are edge types,
following the format 'str:str:str', and the values are lists of
feature names.
"""
super
().
__init__
(
datapipe
,
self
.
_read
)
self
.
feature_store
=
feature_store
self
.
node_feature_keys
=
node_feature_keys
...
...
python/dgl/graphbolt/impl/in_subgraph_sampler.py
View file @
f6fa920d
...
...
@@ -15,6 +15,8 @@ __all__ = ["InSubgraphSampler"]
class
InSubgraphSampler
(
SubgraphSampler
):
"""Sample the subgraph induced on the inbound edges of the given nodes.
Functional name: :obj:`sample_in_subgraph`.
In-subgraph sampler is responsible for sampling a subgraph from given data,
returning an induced subgraph along with compacted information.
...
...
python/dgl/graphbolt/impl/neighbor_sampler.py
View file @
f6fa920d
...
...
@@ -20,6 +20,8 @@ __all__ = ["NeighborSampler", "LayerNeighborSampler"]
class
NeighborSampler
(
SubgraphSampler
):
"""Sample neighbor edges from a graph and return a subgraph.
Functional name: :obj:`sample_neighbor`.
Neighbor sampler is responsible for sampling a subgraph from given data. It
returns an induced subgraph along with compacted information. In the
context of a node classification task, the neighbor sampler directly
...
...
@@ -183,6 +185,8 @@ class NeighborSampler(SubgraphSampler):
class
LayerNeighborSampler
(
NeighborSampler
):
"""Sample layer neighbor edges from a graph and return a subgraph.
Functional name: :obj:`sample_layer_neighbor`.
Sampler that builds computational dependency of node representations via
labor sampling for multilayer GNN from the NeurIPS 2023 paper
`Layer-Neighbor Sampling -- Defusing Neighborhood Explosion in GNNs
...
...
python/dgl/graphbolt/impl/uniform_negative_sampler.py
View file @
f6fa920d
...
...
@@ -12,6 +12,8 @@ class UniformNegativeSampler(NegativeSampler):
"""Sample negative destination nodes for each source node based on a uniform
distribution.
Functional name: :obj:`sample_uniform_negative`.
It's important to note that the term 'negative' refers to false negatives,
indicating that the sampled pairs are not ensured to be absent in the graph.
For each edge ``(u, v)``, it is supposed to generate `negative_ratio` pairs
...
...
python/dgl/graphbolt/minibatch_transformer.py
View file @
f6fa920d
...
...
@@ -14,23 +14,24 @@ __all__ = [
@
functional_datapipe
(
"transform"
)
class
MiniBatchTransformer
(
Mapper
):
"""A mini-batch transformer used to manipulate mini-batch"""
"""A mini-batch transformer used to manipulate mini-batch.
Functional name: :obj:`transform`.
Parameters
----------
datapipe : DataPipe
The datapipe.
transformer:
The function applied to each minibatch which is responsible for
transforming the minibatch.
"""
def
__init__
(
self
,
datapipe
,
transformer
,
):
"""
Initlization for a subgraph transformer.
Parameters
----------
datapipe : DataPipe
The datapipe.
transformer:
The function applied to each minibatch which is responsible for
transforming the minibatch.
"""
super
().
__init__
(
datapipe
,
self
.
_transformer
)
self
.
transformer
=
transformer
...
...
@@ -44,17 +45,18 @@ class MiniBatchTransformer(Mapper):
@
functional_datapipe
(
"to_dgl"
)
class
DGLMiniBatchConverter
(
Mapper
):
"""Convert a graphbolt mini-batch to a dgl mini-batch."""
"""Convert a graphbolt mini-batch to a dgl mini-batch.
Functional name: :obj:`to_dgl`.
Parameters
----------
datapipe : DataPipe
The datapipe.
"""
def
__init__
(
self
,
datapipe
,
):
"""
Initlization for a subgraph transformer.
Parameters
----------
datapipe : DataPipe
The datapipe.
"""
super
().
__init__
(
datapipe
,
MiniBatch
.
to_dgl
)
python/dgl/graphbolt/negative_sampler.py
View file @
f6fa920d
...
...
@@ -16,6 +16,15 @@ class NegativeSampler(MiniBatchTransformer):
"""
A negative sampler used to generate negative samples and return
a mix of positive and negative samples.
Functional name: :obj:`sample_negative`.
Parameters
----------
datapipe : DataPipe
The datapipe.
negative_ratio : int
The proportion of negative samples to positive samples.
"""
def
__init__
(
...
...
@@ -23,16 +32,6 @@ class NegativeSampler(MiniBatchTransformer):
datapipe
,
negative_ratio
,
):
"""
Initlization for a negative sampler.
Parameters
----------
datapipe : DataPipe
The datapipe.
negative_ratio : int
The proportion of negative samples to positive samples.
"""
super
().
__init__
(
datapipe
,
self
.
_sample
)
assert
negative_ratio
>
0
,
"Negative_ratio should be positive Integer."
self
.
negative_ratio
=
negative_ratio
...
...
python/dgl/graphbolt/subgraph_sampler.py
View file @
f6fa920d
...
...
@@ -17,20 +17,20 @@ __all__ = [
@
functional_datapipe
(
"sample_subgraph"
)
class
SubgraphSampler
(
MiniBatchTransformer
):
"""A subgraph sampler used to sample a subgraph from a given set of nodes
from a larger graph."""
from a larger graph.
Functional name: :obj:`sample_subgraph`.
Parameters
----------
datapipe : DataPipe
The datapipe.
"""
def
__init__
(
self
,
datapipe
,
):
"""
Initlization for a subgraph sampler.
Parameters
----------
datapipe : DataPipe
The datapipe.
"""
super
().
__init__
(
datapipe
,
self
.
_sample
)
def
_sample
(
self
,
minibatch
):
...
...
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