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OpenDAS
dgl
Commits
77c84834
Unverified
Commit
77c84834
authored
Aug 09, 2023
by
Andrei Ivanov
Committed by
GitHub
Aug 10, 2023
Browse files
Improving serialize tests (#6116)
parent
d19887cd
Changes
1
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1 changed file
with
22 additions
and
27 deletions
+22
-27
tests/python/common/data/test_serialize.py
tests/python/common/data/test_serialize.py
+22
-27
No files found.
tests/python/common/data/test_serialize.py
View file @
77c84834
...
...
@@ -2,6 +2,7 @@ import os
import
tempfile
import
time
import
unittest
import
warnings
import
backend
as
F
...
...
@@ -10,26 +11,22 @@ import dgl.ndarray as nd
import
numpy
as
np
import
pytest
import
scipy
as
sp
from
dgl
import
DGLGraph
from
dgl.data.utils
import
load_labels
,
load_tensors
,
save_tensors
np
.
random
.
seed
(
44
)
def
generate_rand_graph
(
n
,
is_hetero
):
def
generate_rand_graph
(
n
):
arr
=
(
sp
.
sparse
.
random
(
n
,
n
,
density
=
0.1
,
format
=
"coo"
)
!=
0
).
astype
(
np
.
int64
)
if
is_hetero
:
return
dgl
.
from_scipy
(
arr
)
else
:
return
DGLGraph
(
arr
,
readonly
=
True
)
return
dgl
.
from_scipy
(
arr
)
def
construct_graph
(
n
,
is_hetero
):
def
construct_graph
(
n
):
g_list
=
[]
for
i
in
range
(
n
):
g
=
generate_rand_graph
(
30
,
is_hetero
)
for
_
in
range
(
n
):
g
=
generate_rand_graph
(
30
)
g
.
edata
[
"e1"
]
=
F
.
randn
((
g
.
num_edges
(),
32
))
g
.
edata
[
"e2"
]
=
F
.
ones
((
g
.
num_edges
(),
32
))
g
.
ndata
[
"n1"
]
=
F
.
randn
((
g
.
num_nodes
(),
64
))
...
...
@@ -38,13 +35,12 @@ def construct_graph(n, is_hetero):
@
unittest
.
skipIf
(
F
.
_default_context_str
==
"gpu"
,
reason
=
"GPU not implemented"
)
@
pytest
.
mark
.
parametrize
(
"is_hetero"
,
[
True
,
False
])
def
test_graph_serialize_with_feature
(
is_hetero
):
def
test_graph_serialize_with_feature
():
num_graphs
=
100
t0
=
time
.
time
()
g_list
=
construct_graph
(
num_graphs
,
is_hetero
)
g_list
=
construct_graph
(
num_graphs
)
t1
=
time
.
time
()
...
...
@@ -80,10 +76,9 @@ def test_graph_serialize_with_feature(is_hetero):
@
unittest
.
skipIf
(
F
.
_default_context_str
==
"gpu"
,
reason
=
"GPU not implemented"
)
@
pytest
.
mark
.
parametrize
(
"is_hetero"
,
[
True
,
False
])
def
test_graph_serialize_without_feature
(
is_hetero
):
def
test_graph_serialize_without_feature
():
num_graphs
=
100
g_list
=
[
generate_rand_graph
(
30
,
is_hetero
)
for
_
in
range
(
num_graphs
)]
g_list
=
[
generate_rand_graph
(
30
)
for
_
in
range
(
num_graphs
)]
# create a temporary file and immediately release it so DGL can open it.
f
=
tempfile
.
NamedTemporaryFile
(
delete
=
False
)
...
...
@@ -109,10 +104,9 @@ def test_graph_serialize_without_feature(is_hetero):
@
unittest
.
skipIf
(
F
.
_default_context_str
==
"gpu"
,
reason
=
"GPU not implemented"
)
@
pytest
.
mark
.
parametrize
(
"is_hetero"
,
[
True
,
False
])
def
test_graph_serialize_with_labels
(
is_hetero
):
def
test_graph_serialize_with_labels
():
num_graphs
=
100
g_list
=
[
generate_rand_graph
(
30
,
is_hetero
)
for
_
in
range
(
num_graphs
)]
g_list
=
[
generate_rand_graph
(
30
)
for
_
in
range
(
num_graphs
)]
labels
=
{
"label"
:
F
.
zeros
((
num_graphs
,
1
))}
# create a temporary file and immediately release it so DGL can open it.
...
...
@@ -191,10 +185,14 @@ def test_serialize_empty_dict():
os
.
unlink
(
path
)
def
load_old_files
(
files
):
with
warnings
.
catch_warnings
():
warnings
.
simplefilter
(
"ignore"
,
category
=
UserWarning
)
return
dgl
.
load_graphs
(
os
.
path
.
join
(
os
.
path
.
dirname
(
__file__
),
files
))
def
test_load_old_files1
():
loadg_list
,
_
=
dgl
.
load_graphs
(
os
.
path
.
join
(
os
.
path
.
dirname
(
__file__
),
"data/1.bin"
)
)
loadg_list
,
_
=
load_old_files
(
"data/1.bin"
)
idx
,
num_nodes
,
edge0
,
edge1
,
edata_e1
,
edata_e2
,
ndata_n1
=
np
.
load
(
os
.
path
.
join
(
os
.
path
.
dirname
(
__file__
),
"data/1.npy"
),
allow_pickle
=
True
)
...
...
@@ -210,9 +208,7 @@ def test_load_old_files1():
def
test_load_old_files2
():
loadg_list
,
labels0
=
dgl
.
load_graphs
(
os
.
path
.
join
(
os
.
path
.
dirname
(
__file__
),
"data/2.bin"
)
)
loadg_list
,
labels0
=
load_old_files
(
"data/2.bin"
)
labels1
=
load_labels
(
os
.
path
.
join
(
os
.
path
.
dirname
(
__file__
),
"data/2.bin"
))
idx
,
edges0
,
edges1
,
np_labels
=
np
.
load
(
os
.
path
.
join
(
os
.
path
.
dirname
(
__file__
),
"data/2.npy"
),
allow_pickle
=
True
...
...
@@ -365,7 +361,6 @@ def test_serialize_heterograph_s3():
@
unittest
.
skipIf
(
F
.
_default_context_str
==
"gpu"
,
reason
=
"GPU not implemented"
)
@
pytest
.
mark
.
parametrize
(
"is_hetero"
,
[
True
,
False
])
@
pytest
.
mark
.
parametrize
(
"formats"
,
[
...
...
@@ -378,9 +373,9 @@ def test_serialize_heterograph_s3():
[
"coo"
,
"csr"
,
"csc"
],
],
)
def
test_graph_serialize_with_formats
(
is_hetero
,
formats
):
def
test_graph_serialize_with_formats
(
formats
):
num_graphs
=
100
g_list
=
[
generate_rand_graph
(
30
,
is_hetero
)
for
_
in
range
(
num_graphs
)]
g_list
=
[
generate_rand_graph
(
30
)
for
_
in
range
(
num_graphs
)]
# create a temporary file and immediately release it so DGL can open it.
f
=
tempfile
.
NamedTemporaryFile
(
delete
=
False
)
...
...
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