test_geometry.py

import backend as F
import dgl.nn
import dgl
import numpy as np
import pytest
import torch as th
from dgl.geometry.pytorch import FarthestPointSampler
from dgl.geometry import neighbor_matching
from test_utils import parametrize_dtype
from test_utils.graph_cases import get_cases


def test_fps():
    N = 1000
    batch_size = 5
    sample_points = 10
    x = th.tensor(np.random.uniform(size=(batch_size, int(N/batch_size), 3)))
    ctx = F.ctx()
    if F.gpu_ctx():
        x = x.to(ctx)
    fps = FarthestPointSampler(sample_points)
    res = fps(x)
    assert res.shape[0] == batch_size
    assert res.shape[1] == sample_points
    assert res.sum() > 0


@pytest.mark.parametrize('algorithm', ['topk', 'kd-tree'])
def test_knn(algorithm):
    x = th.randn(8, 3)
    kg = dgl.nn.KNNGraph(3)
    d = th.cdist(x, x)

    def check_knn(g, x, start, end):
        for v in range(start, end):
            src, _ = g.in_edges(v)
            src = set(src.numpy())
            i = v - start
            src_ans = set(th.topk(d[start:end, start:end][i], 3, largest=False)[1].numpy() + start)
            assert src == src_ans

    g = kg(x, algorithm)
    check_knn(g, x, 0, 8)

    g = kg(x.view(2, 4, 3), algorithm)
    check_knn(g, x, 0, 4)
    check_knn(g, x, 4, 8)

    kg = dgl.nn.SegmentedKNNGraph(3)
    g = kg(x, [3, 5], algorithm)
    check_knn(g, x, 0, 3)
    check_knn(g, x, 3, 8)


@parametrize_dtype
@pytest.mark.parametrize('g', get_cases(['homo'], exclude=['dglgraph']))
@pytest.mark.parametrize('weight', [True, False])
@pytest.mark.parametrize('relabel', [True, False])
def test_edge_coarsening(idtype, g, weight, relabel):
    num_nodes = g.num_nodes()
    g = dgl.to_bidirected(g)
    g = g.astype(idtype).to(F.ctx())
    edge_weight = None
    if weight:
        edge_weight = F.abs(F.randn((g.num_edges(),))).to(F.ctx())
    node_labels = neighbor_matching(g, edge_weight, relabel_idx=relabel)
    unique_ids, counts = th.unique(node_labels, return_counts=True)
    num_result_ids = unique_ids.size(0)

    # shape correct
    assert node_labels.shape == (g.num_nodes(),)

    # all nodes marked
    assert F.reduce_sum(node_labels < 0).item() == 0

    # number of unique node ids correct.
    assert num_result_ids >= num_nodes // 2 and num_result_ids <= num_nodes

    # each unique id has <= 2 nodes
    assert F.reduce_sum(counts > 2).item() == 0

    # if two nodes have the same id, they must be neighbors
    idxs = F.arange(0, num_nodes, idtype)
    for l in unique_ids:
        l = l.item()
        idx = idxs[(node_labels == l)]
        if idx.size(0) == 2:
            u, v = idx[0].item(), idx[1].item()
            assert g.has_edges_between(u, v)


if __name__ == '__main__':
    test_fps()
    test_knn()