data-loadogb.rst

.. _guide-data-pipeline-loadogb:

4.5 Loading OGB datasets using ``ogb`` package
----------------------------------------------

:ref:`(中文版) <guide_cn-data-pipeline-loadogb>`

`Open Graph Benchmark (OGB) <https://ogb.stanford.edu/docs/home/>`__ is
a collection of benchmark datasets. The official OGB package
`ogb <https://github.com/snap-stanford/ogb>`__ provides APIs for
downloading and processing OGB datasets into :class:`dgl.data.DGLGraph` objects. The section
introduce their basic usage here.

First install ogb package using pip:

.. code:: 

    pip install ogb

The following code shows how to load datasets for *Graph Property
Prediction* tasks.

.. code:: 

    # Load Graph Property Prediction datasets in OGB
    import dgl
    import torch
    from ogb.graphproppred import DglGraphPropPredDataset
    from dgl.dataloading import GraphDataLoader
    
    
    def _collate_fn(batch):
        # batch is a list of tuple (graph, label)
        graphs = [e[0] for e in batch]
        g = dgl.batch(graphs)
        labels = [e[1] for e in batch]
        labels = torch.stack(labels, 0)
        return g, labels
    
    # load dataset
    dataset = DglGraphPropPredDataset(name='ogbg-molhiv')
    split_idx = dataset.get_idx_split()
    # dataloader
    train_loader = GraphDataLoader(dataset[split_idx["train"]], batch_size=32, shuffle=True, collate_fn=_collate_fn)
    valid_loader = GraphDataLoader(dataset[split_idx["valid"]], batch_size=32, shuffle=False, collate_fn=_collate_fn)
    test_loader = GraphDataLoader(dataset[split_idx["test"]], batch_size=32, shuffle=False, collate_fn=_collate_fn)

Loading *Node Property Prediction* datasets is similar, but note that
there is only one graph object in this kind of dataset.

.. code:: 

    # Load Node Property Prediction datasets in OGB
    from ogb.nodeproppred import DglNodePropPredDataset
    
    dataset = DglNodePropPredDataset(name='ogbn-proteins')
    split_idx = dataset.get_idx_split()
    
    # there is only one graph in Node Property Prediction datasets
    g, labels = dataset[0]
    # get split labels
    train_label = dataset.labels[split_idx['train']]
    valid_label = dataset.labels[split_idx['valid']]
    test_label = dataset.labels[split_idx['test']]

*Link Property Prediction* datasets also contain one graph per dataset.

.. code:: 

    # Load Link Property Prediction datasets in OGB
    from ogb.linkproppred import DglLinkPropPredDataset
    
    dataset = DglLinkPropPredDataset(name='ogbl-ppa')
    split_edge = dataset.get_edge_split()
    
    graph = dataset[0]
    print(split_edge['train'].keys())
    print(split_edge['valid'].keys())
    print(split_edge['test'].keys())