heterograph.cc 20.9 KB
Newer Older
1
2
3
4
5
6
/*!
 *  Copyright (c) 2019 by Contributors
 * \file graph/heterograph.cc
 * \brief Heterograph implementation
 */
#include "./heterograph.h"
Minjie Wang's avatar
Minjie Wang committed
7
#include <dgl/array.h>
8
#include <dgl/immutable_graph.h>
9
#include <dgl/graph_serializer.h>
10
11
#include <dmlc/memory_io.h>
#include <memory>
12
13
14
#include <vector>
#include <tuple>
#include <utility>
15
16
17
18
19
20

using namespace dgl::runtime;

namespace dgl {
namespace {

21
22
using dgl::ImmutableGraph;

23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
HeteroSubgraph EdgeSubgraphPreserveNodes(
    const HeteroGraph* hg, const std::vector<IdArray>& eids) {
  CHECK_EQ(eids.size(), hg->NumEdgeTypes())
    << "Invalid input: the input list size must be the same as the number of edge type.";
  HeteroSubgraph ret;
  ret.induced_vertices.resize(hg->NumVertexTypes());
  ret.induced_edges = eids;
  // When preserve_nodes is true, simply compute EdgeSubgraph for each bipartite
  std::vector<HeteroGraphPtr> subrels(hg->NumEdgeTypes());
  for (dgl_type_t etype = 0; etype < hg->NumEdgeTypes(); ++etype) {
    auto pair = hg->meta_graph()->FindEdge(etype);
    const dgl_type_t src_vtype = pair.first;
    const dgl_type_t dst_vtype = pair.second;
    const auto& rel_vsg = hg->GetRelationGraph(etype)->EdgeSubgraph(
        {eids[etype]}, true);
    subrels[etype] = rel_vsg.graph;
    ret.induced_vertices[src_vtype] = rel_vsg.induced_vertices[0];
    ret.induced_vertices[dst_vtype] = rel_vsg.induced_vertices[1];
  }
42
43
  ret.graph = HeteroGraphPtr(new HeteroGraph(
      hg->meta_graph(), subrels, hg->NumVerticesPerType()));
44
45
46
47
48
  return ret;
}

HeteroSubgraph EdgeSubgraphNoPreserveNodes(
    const HeteroGraph* hg, const std::vector<IdArray>& eids) {
49
50
51
52
  // TODO(minjie): In general, all relabeling should be separated with subgraph
  //   operations.
  CHECK(hg->Context().device_type != kDLGPU)
    << "Edge subgraph with relabeling does not support GPU.";
53
54
55
56
57
58
59
60
61
62
63
  CHECK_EQ(eids.size(), hg->NumEdgeTypes())
    << "Invalid input: the input list size must be the same as the number of edge type.";
  HeteroSubgraph ret;
  ret.induced_vertices.resize(hg->NumVertexTypes());
  ret.induced_edges = eids;
  // NOTE(minjie): EdgeSubgraph when preserve_nodes is false is quite complicated in
  // heterograph. This is because we need to make sure bipartite graphs that incident
  // on the same vertex type must have the same ID space. For example, suppose we have
  // following heterograph:
  //
  // Meta graph: A -> B -> C
Minjie Wang's avatar
Minjie Wang committed
64
  // UnitGraph graphs:
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
  // * A -> B: (0, 0), (0, 1)
  // * B -> C: (1, 0), (1, 1)
  //
  // Suppose for A->B, we only keep edge (0, 0), while for B->C we only keep (1, 0). We need
  // to make sure that in the result subgraph, node type B still has two nodes. This means
  // we cannot simply compute EdgeSubgraph for B->C which will relabel node#1 of type B to be
  // node #0.
  //
  // One implementation is as follows:
  // (1) For each bipartite graph, slice out the edges using the given eids.
  // (2) Make a dictionary map<vtype, vector<IdArray>>, where the key is the vertex type
  //     and the value is the incident nodes from the bipartite graphs that has the vertex
  //     type as either srctype or dsttype.
  // (3) Then for each vertex type, use aten::Relabel_ on its vector<IdArray>.
  //     aten::Relabel_ computes the union of the vertex sets and relabel
  //     the unique elements from zero. The returned mapping array is the final induced
  //     vertex set for that vertex type.
  // (4) Use the relabeled edges to construct the bipartite graph.
  // step (1) & (2)
  std::vector<EdgeArray> subedges(hg->NumEdgeTypes());
  std::vector<std::vector<IdArray>> vtype2incnodes(hg->NumVertexTypes());
  for (dgl_type_t etype = 0; etype < hg->NumEdgeTypes(); ++etype) {
    auto pair = hg->meta_graph()->FindEdge(etype);
    const dgl_type_t src_vtype = pair.first;
    const dgl_type_t dst_vtype = pair.second;
    auto earray = hg->GetRelationGraph(etype)->FindEdges(0, eids[etype]);
    vtype2incnodes[src_vtype].push_back(earray.src);
    vtype2incnodes[dst_vtype].push_back(earray.dst);
    subedges[etype] = earray;
  }
  // step (3)
96
  std::vector<int64_t> num_vertices_per_type(hg->NumVertexTypes());
97
98
  for (dgl_type_t vtype = 0; vtype < hg->NumVertexTypes(); ++vtype) {
    ret.induced_vertices[vtype] = aten::Relabel_(vtype2incnodes[vtype]);
99
    num_vertices_per_type[vtype] = ret.induced_vertices[vtype]->shape[0];
100
101
102
103
104
105
106
  }
  // step (4)
  std::vector<HeteroGraphPtr> subrels(hg->NumEdgeTypes());
  for (dgl_type_t etype = 0; etype < hg->NumEdgeTypes(); ++etype) {
    auto pair = hg->meta_graph()->FindEdge(etype);
    const dgl_type_t src_vtype = pair.first;
    const dgl_type_t dst_vtype = pair.second;
Minjie Wang's avatar
Minjie Wang committed
107
108
    subrels[etype] = UnitGraph::CreateFromCOO(
      (src_vtype == dst_vtype)? 1 : 2,
109
110
111
112
113
      ret.induced_vertices[src_vtype]->shape[0],
      ret.induced_vertices[dst_vtype]->shape[0],
      subedges[etype].src,
      subedges[etype].dst);
  }
114
115
  ret.graph = HeteroGraphPtr(new HeteroGraph(
      hg->meta_graph(), subrels, std::move(num_vertices_per_type)));
116
117
118
  return ret;
}

119
void HeteroGraphSanityCheck(GraphPtr meta_graph, const std::vector<HeteroGraphPtr>& rel_graphs) {
120
121
122
  // Sanity check
  CHECK_EQ(meta_graph->NumEdges(), rel_graphs.size());
  CHECK(!rel_graphs.empty()) << "Empty heterograph is not allowed.";
Minjie Wang's avatar
Minjie Wang committed
123
  // all relation graphs must have only one edge type
124
  for (const auto &rg : rel_graphs) {
Minjie Wang's avatar
Minjie Wang committed
125
    CHECK_EQ(rg->NumEdgeTypes(), 1) << "Each relation graph must have only one edge type.";
126
  }
127
128
129
130
}

std::vector<int64_t>
InferNumVerticesPerType(GraphPtr meta_graph, const std::vector<HeteroGraphPtr>& rel_graphs) {
131
  // create num verts per type
132
  std::vector<int64_t> num_verts_per_type(meta_graph->NumVertices(), -1);
133
134
135
136
137
138
139
140
141

  EdgeArray etype_array = meta_graph->Edges();
  dgl_type_t *srctypes = static_cast<dgl_type_t *>(etype_array.src->data);
  dgl_type_t *dsttypes = static_cast<dgl_type_t *>(etype_array.dst->data);
  dgl_type_t *etypes = static_cast<dgl_type_t *>(etype_array.id->data);
  for (size_t i = 0; i < meta_graph->NumEdges(); ++i) {
    dgl_type_t srctype = srctypes[i];
    dgl_type_t dsttype = dsttypes[i];
    dgl_type_t etype = etypes[i];
Minjie Wang's avatar
Minjie Wang committed
142
143
144
    const auto& rg = rel_graphs[etype];
    const auto sty = 0;
    const auto dty = rg->NumVertexTypes() == 1? 0 : 1;
145
146
147
    size_t nv;

    // # nodes of source type
Minjie Wang's avatar
Minjie Wang committed
148
    nv = rg->NumVertices(sty);
149
150
    if (num_verts_per_type[srctype] < 0)
      num_verts_per_type[srctype] = nv;
151
    else
152
      CHECK_EQ(num_verts_per_type[srctype], nv)
153
154
        << "Mismatch number of vertices for vertex type " << srctype;
    // # nodes of destination type
Minjie Wang's avatar
Minjie Wang committed
155
    nv = rg->NumVertices(dty);
156
157
    if (num_verts_per_type[dsttype] < 0)
      num_verts_per_type[dsttype] = nv;
158
    else
159
      CHECK_EQ(num_verts_per_type[dsttype], nv)
160
        << "Mismatch number of vertices for vertex type " << dsttype;
161
  }
162
163
  return num_verts_per_type;
}
164

165
166
std::vector<UnitGraphPtr> CastToUnitGraphs(const std::vector<HeteroGraphPtr>& rel_graphs) {
  std::vector<UnitGraphPtr> relation_graphs(rel_graphs.size());
167
168
169
  for (size_t i = 0; i < rel_graphs.size(); ++i) {
    HeteroGraphPtr relg = rel_graphs[i];
    if (std::dynamic_pointer_cast<UnitGraph>(relg)) {
170
      relation_graphs[i] = std::dynamic_pointer_cast<UnitGraph>(relg);
171
    } else {
172
      relation_graphs[i] = CHECK_NOTNULL(
173
174
175
          std::dynamic_pointer_cast<UnitGraph>(relg->GetRelationGraph(0)));
    }
  }
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
  return relation_graphs;
}

}  // namespace

HeteroGraph::HeteroGraph(
    GraphPtr meta_graph,
    const std::vector<HeteroGraphPtr>& rel_graphs,
    const std::vector<int64_t>& num_nodes_per_type) : BaseHeteroGraph(meta_graph) {
  if (num_nodes_per_type.size() == 0)
    num_verts_per_type_ = InferNumVerticesPerType(meta_graph, rel_graphs);
  else
    num_verts_per_type_ = num_nodes_per_type;
  HeteroGraphSanityCheck(meta_graph, rel_graphs);
  relation_graphs_ = CastToUnitGraphs(rel_graphs);
191
192
193
}

bool HeteroGraph::IsMultigraph() const {
194
195
196
197
198
199
  for (const auto &hg : relation_graphs_) {
    if (hg->IsMultigraph()) {
      return true;
    }
  }
  return false;
200
201
202
}

BoolArray HeteroGraph::HasVertices(dgl_type_t vtype, IdArray vids) const {
203
  CHECK(aten::IsValidIdArray(vids)) << "Invalid id array input";
204
205
206
207
208
209
210
211
  return aten::LT(vids, NumVertices(vtype));
}

HeteroSubgraph HeteroGraph::VertexSubgraph(const std::vector<IdArray>& vids) const {
  CHECK_EQ(vids.size(), NumVertexTypes())
    << "Invalid input: the input list size must be the same as the number of vertex types.";
  HeteroSubgraph ret;
  ret.induced_vertices = vids;
212
213
214
  std::vector<int64_t> num_vertices_per_type(NumVertexTypes());
  for (dgl_type_t vtype = 0; vtype < NumVertexTypes(); ++vtype)
    num_vertices_per_type[vtype] = vids[vtype]->shape[0];
215
216
217
218
219
220
  ret.induced_edges.resize(NumEdgeTypes());
  std::vector<HeteroGraphPtr> subrels(NumEdgeTypes());
  for (dgl_type_t etype = 0; etype < NumEdgeTypes(); ++etype) {
    auto pair = meta_graph_->FindEdge(etype);
    const dgl_type_t src_vtype = pair.first;
    const dgl_type_t dst_vtype = pair.second;
Minjie Wang's avatar
Minjie Wang committed
221
222
223
224
    const std::vector<IdArray> rel_vids = (src_vtype == dst_vtype) ?
      std::vector<IdArray>({vids[src_vtype]}) :
      std::vector<IdArray>({vids[src_vtype], vids[dst_vtype]});
    const auto& rel_vsg = GetRelationGraph(etype)->VertexSubgraph(rel_vids);
225
226
227
    subrels[etype] = rel_vsg.graph;
    ret.induced_edges[etype] = rel_vsg.induced_edges[0];
  }
228
229
  ret.graph = HeteroGraphPtr(new HeteroGraph(
      meta_graph_, subrels, std::move(num_vertices_per_type)));
230
231
232
233
234
235
236
237
238
239
240
241
  return ret;
}

HeteroSubgraph HeteroGraph::EdgeSubgraph(
    const std::vector<IdArray>& eids, bool preserve_nodes) const {
  if (preserve_nodes) {
    return EdgeSubgraphPreserveNodes(this, eids);
  } else {
    return EdgeSubgraphNoPreserveNodes(this, eids);
  }
}

242
243
244
245
246
247
248
249
250
251
252
HeteroGraphPtr HeteroGraph::AsNumBits(HeteroGraphPtr g, uint8_t bits) {
  auto hgindex = std::dynamic_pointer_cast<HeteroGraph>(g);
  CHECK_NOTNULL(hgindex);
  std::vector<HeteroGraphPtr> rel_graphs;
  for (auto g : hgindex->relation_graphs_) {
    rel_graphs.push_back(UnitGraph::AsNumBits(g, bits));
  }
  return HeteroGraphPtr(new HeteroGraph(hgindex->meta_graph_, rel_graphs,
                                        hgindex->num_verts_per_type_));
}

253
254
255
256
257
258
259
260
261
262
263
264
265
266
HeteroGraphPtr HeteroGraph::CopyTo(HeteroGraphPtr g, const DLContext& ctx) {
  if (ctx == g->Context()) {
    return g;
  }
  auto hgindex = std::dynamic_pointer_cast<HeteroGraph>(g);
  CHECK_NOTNULL(hgindex);
  std::vector<HeteroGraphPtr> rel_graphs;
  for (auto g : hgindex->relation_graphs_) {
    rel_graphs.push_back(UnitGraph::CopyTo(g, ctx));
  }
  return HeteroGraphPtr(new HeteroGraph(hgindex->meta_graph_, rel_graphs,
                                        hgindex->num_verts_per_type_));
}

267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
std::string HeteroGraph::SharedMemName() const {
  return shared_mem_ ? shared_mem_->GetName() : "";
}

HeteroGraphPtr HeteroGraph::CopyToSharedMem(
      HeteroGraphPtr g, const std::string& name, const std::vector<std::string>& ntypes,
      const std::vector<std::string>& etypes, const std::set<std::string>& fmts) {
  // TODO(JJ): Raise error when calling shared_memory if graph index is on gpu
  auto hg = std::dynamic_pointer_cast<HeteroGraph>(g);
  CHECK_NOTNULL(hg);
  if (hg->SharedMemName() == name)
    return g;

  // Copy buffer to share memory
  auto mem = std::make_shared<SharedMemory>(name);
  auto mem_buf = mem->CreateNew(SHARED_MEM_METAINFO_SIZE_MAX);
  dmlc::MemoryFixedSizeStream strm(mem_buf, SHARED_MEM_METAINFO_SIZE_MAX);
  SharedMemManager shm(name, &strm);

  bool has_coo = fmts.find("coo") != fmts.end();
  bool has_csr = fmts.find("csr") != fmts.end();
  bool has_csc = fmts.find("csc") != fmts.end();
  shm.Write(g->NumBits());
  shm.Write(has_coo);
  shm.Write(has_csr);
  shm.Write(has_csc);
  shm.Write(ImmutableGraph::ToImmutable(hg->meta_graph_));
  shm.Write(hg->num_verts_per_type_);

  std::vector<HeteroGraphPtr> relgraphs(g->NumEdgeTypes());

  for (dgl_type_t etype = 0 ; etype < g->NumEdgeTypes() ; ++etype) {
    aten::COOMatrix coo;
    aten::CSRMatrix csr, csc;
    std::string prefix = name + "_" + std::to_string(etype);
    if (has_coo) {
      coo = shm.CopyToSharedMem(hg->GetCOOMatrix(etype), prefix + "_coo");
    }
    if (has_csr) {
      csr = shm.CopyToSharedMem(hg->GetCSRMatrix(etype), prefix + "_csr");
    }
    if (has_csc) {
      csc = shm.CopyToSharedMem(hg->GetCSCMatrix(etype), prefix + "_csc");
    }
    relgraphs[etype] = UnitGraph::CreateHomographFrom(csc, csr, coo, has_csc, has_csr, has_coo);
  }

  auto ret = std::shared_ptr<HeteroGraph>(
      new HeteroGraph(hg->meta_graph_, relgraphs, hg->num_verts_per_type_));
  ret->shared_mem_ = mem;

  shm.Write(ntypes);
  shm.Write(etypes);
  return ret;
}

std::tuple<HeteroGraphPtr, std::vector<std::string>, std::vector<std::string>>
    HeteroGraph::CreateFromSharedMem(const std::string &name) {
325
326
327
328
  bool exist = SharedMemory::Exist(name);
  if (!exist) {
    return std::make_tuple(nullptr, std::vector<std::string>(), std::vector<std::string>());
  }
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
  auto mem = std::make_shared<SharedMemory>(name);
  auto mem_buf = mem->Open(SHARED_MEM_METAINFO_SIZE_MAX);
  dmlc::MemoryFixedSizeStream strm(mem_buf, SHARED_MEM_METAINFO_SIZE_MAX);
  SharedMemManager shm(name, &strm);

  uint8_t nbits;
  CHECK(shm.Read(&nbits)) << "invalid nbits (unit8_t)";

  bool has_coo, has_csr, has_csc;
  CHECK(shm.Read(&has_coo)) << "invalid nbits (unit8_t)";
  CHECK(shm.Read(&has_csr)) << "invalid csr (unit8_t)";
  CHECK(shm.Read(&has_csc)) << "invalid csc (unit8_t)";

  auto meta_imgraph = Serializer::make_shared<ImmutableGraph>();
  CHECK(shm.Read(&meta_imgraph)) << "Invalid meta graph";
  GraphPtr metagraph = meta_imgraph;

  std::vector<int64_t> num_verts_per_type;
  CHECK(shm.Read(&num_verts_per_type)) << "Invalid number of vertices per type";

  std::vector<HeteroGraphPtr> relgraphs(metagraph->NumEdges());
  for (dgl_type_t etype = 0 ; etype < metagraph->NumEdges() ; ++etype) {
    aten::COOMatrix coo;
    aten::CSRMatrix csr, csc;
    std::string prefix = name + "_" + std::to_string(etype);
    if (has_coo) {
      shm.CreateFromSharedMem(&coo, prefix + "_coo");
    }
    if (has_csr) {
      shm.CreateFromSharedMem(&csr, prefix + "_csr");
    }
    if (has_csc) {
      shm.CreateFromSharedMem(&csc, prefix + "_csc");
    }

    relgraphs[etype] = UnitGraph::CreateHomographFrom(csc, csr, coo, has_csc, has_csr, has_coo);
  }

  auto ret = std::make_shared<HeteroGraph>(metagraph, relgraphs, num_verts_per_type);
  ret->shared_mem_ = mem;

  std::vector<std::string> ntypes;
  std::vector<std::string> etypes;
  CHECK(shm.Read(&ntypes)) << "invalid ntypes";
  CHECK(shm.Read(&etypes)) << "invalid etypes";
  return std::make_tuple(ret, ntypes, etypes);
}

377
HeteroGraphPtr HeteroGraph::GetGraphInFormat(dgl_format_code_t formats) const {
378
379
380
  std::vector<HeteroGraphPtr> format_rels(NumEdgeTypes());
  for (dgl_type_t etype = 0; etype < NumEdgeTypes(); ++etype) {
    auto relgraph = std::dynamic_pointer_cast<UnitGraph>(GetRelationGraph(etype));
381
    format_rels[etype] = relgraph->GetGraphInFormat(formats);
382
383
384
385
386
  }
  return HeteroGraphPtr(new HeteroGraph(
    meta_graph_, format_rels, NumVerticesPerType()));
}

387
388
389
390
391
FlattenedHeteroGraphPtr HeteroGraph::Flatten(
    const std::vector<dgl_type_t>& etypes) const {
  const int64_t bits = NumBits();
  if (bits == 32) {
    return FlattenImpl<int32_t>(etypes);
392
  } else {
393
394
395
396
397
398
    return FlattenImpl<int64_t>(etypes);
  }
}

template <class IdType>
FlattenedHeteroGraphPtr HeteroGraph::FlattenImpl(const std::vector<dgl_type_t>& etypes) const {
Minjie Wang's avatar
Minjie Wang committed
399
400
  std::unordered_map<dgl_type_t, size_t> srctype_offsets, dsttype_offsets;
  size_t src_nodes = 0, dst_nodes = 0;
401
402
  std::vector<dgl_type_t> induced_srctype, induced_dsttype;
  std::vector<IdType> induced_srcid, induced_dstid;
Minjie Wang's avatar
Minjie Wang committed
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
  std::vector<dgl_type_t> srctype_set, dsttype_set;

  // XXXtype_offsets contain the mapping from node type and number of nodes after this
  // loop.
  for (dgl_type_t etype : etypes) {
    auto src_dsttype = meta_graph_->FindEdge(etype);
    dgl_type_t srctype = src_dsttype.first;
    dgl_type_t dsttype = src_dsttype.second;
    size_t num_srctype_nodes = NumVertices(srctype);
    size_t num_dsttype_nodes = NumVertices(dsttype);

    if (srctype_offsets.count(srctype) == 0) {
      srctype_offsets[srctype] = num_srctype_nodes;
      srctype_set.push_back(srctype);
    }
    if (dsttype_offsets.count(dsttype) == 0) {
      dsttype_offsets[dsttype] = num_dsttype_nodes;
      dsttype_set.push_back(dsttype);
    }
  }
423
  // Sort the node types so that we can compare the sets and decide whether a homogeneous graph
Minjie Wang's avatar
Minjie Wang committed
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
  // should be returned.
  std::sort(srctype_set.begin(), srctype_set.end());
  std::sort(dsttype_set.begin(), dsttype_set.end());
  bool homograph = (srctype_set.size() == dsttype_set.size()) &&
    std::equal(srctype_set.begin(), srctype_set.end(), dsttype_set.begin());

  // XXXtype_offsets contain the mapping from node type to node ID offsets after these
  // two loops.
  for (size_t i = 0; i < srctype_set.size(); ++i) {
    dgl_type_t ntype = srctype_set[i];
    size_t num_nodes = srctype_offsets[ntype];
    srctype_offsets[ntype] = src_nodes;
    src_nodes += num_nodes;
    for (size_t j = 0; j < num_nodes; ++j) {
      induced_srctype.push_back(ntype);
      induced_srcid.push_back(j);
    }
  }
  for (size_t i = 0; i < dsttype_set.size(); ++i) {
    dgl_type_t ntype = dsttype_set[i];
    size_t num_nodes = dsttype_offsets[ntype];
    dsttype_offsets[ntype] = dst_nodes;
    dst_nodes += num_nodes;
    for (size_t j = 0; j < num_nodes; ++j) {
      induced_dsttype.push_back(ntype);
      induced_dstid.push_back(j);
    }
  }
452

453
454
455
456
457
458
459
  // TODO(minjie): Using concat operations cause many fragmented memory.
  //   Need to optimize it in the future.
  std::vector<IdArray> src_arrs, dst_arrs, eid_arrs, induced_etypes;
  src_arrs.reserve(etypes.size());
  dst_arrs.reserve(etypes.size());
  eid_arrs.reserve(etypes.size());
  induced_etypes.reserve(etypes.size());
Minjie Wang's avatar
Minjie Wang committed
460
461
462
463
464
465
466
467
468
  for (dgl_type_t etype : etypes) {
    auto src_dsttype = meta_graph_->FindEdge(etype);
    dgl_type_t srctype = src_dsttype.first;
    dgl_type_t dsttype = src_dsttype.second;
    size_t srctype_offset = srctype_offsets[srctype];
    size_t dsttype_offset = dsttype_offsets[dsttype];

    EdgeArray edges = Edges(etype);
    size_t num_edges = NumEdges(etype);
469
470
471
472
    src_arrs.push_back(edges.src + srctype_offset);
    dst_arrs.push_back(edges.dst + dsttype_offset);
    eid_arrs.push_back(edges.id);
    induced_etypes.push_back(aten::Full(etype, num_edges, NumBits(), Context()));
Minjie Wang's avatar
Minjie Wang committed
473
474
475
476
477
478
  }

  HeteroGraphPtr gptr = UnitGraph::CreateFromCOO(
      homograph ? 1 : 2,
      src_nodes,
      dst_nodes,
479
480
481
482
483
484
      aten::Concat(src_arrs),
      aten::Concat(dst_arrs));

  // Sanity check
  CHECK_EQ(gptr->Context(), Context());
  CHECK_EQ(gptr->NumBits(), NumBits());
Minjie Wang's avatar
Minjie Wang committed
485
486
487

  FlattenedHeteroGraph* result = new FlattenedHeteroGraph;
  result->graph = HeteroGraphRef(gptr);
488
489
490
491
492
493
494
495
496
  result->induced_srctype = aten::VecToIdArray(induced_srctype).CopyTo(Context());
  result->induced_srctype_set = aten::VecToIdArray(srctype_set).CopyTo(Context());
  result->induced_srcid = aten::VecToIdArray(induced_srcid).CopyTo(Context());
  result->induced_etype = aten::Concat(induced_etypes);
  result->induced_etype_set = aten::VecToIdArray(etypes).CopyTo(Context());
  result->induced_eid = aten::Concat(eid_arrs);
  result->induced_dsttype = aten::VecToIdArray(induced_dsttype).CopyTo(Context());
  result->induced_dsttype_set = aten::VecToIdArray(dsttype_set).CopyTo(Context());
  result->induced_dstid = aten::VecToIdArray(induced_dstid).CopyTo(Context());
Minjie Wang's avatar
Minjie Wang committed
497
  return FlattenedHeteroGraphPtr(result);
498
499
}

500
501
502
503
504
505
constexpr uint64_t kDGLSerialize_HeteroGraph = 0xDD589FBE35224ABF;

bool HeteroGraph::Load(dmlc::Stream* fs) {
  uint64_t magicNum;
  CHECK(fs->Read(&magicNum)) << "Invalid Magic Number";
  CHECK_EQ(magicNum, kDGLSerialize_HeteroGraph) << "Invalid HeteroGraph Data";
506
507
508
509
510
  auto meta_imgraph = Serializer::make_shared<ImmutableGraph>();
  CHECK(fs->Read(&meta_imgraph)) << "Invalid meta graph";
  meta_graph_ = meta_imgraph;
  CHECK(fs->Read(&relation_graphs_)) << "Invalid relation_graphs_";
  CHECK(fs->Read(&num_verts_per_type_)) << "Invalid num_verts_per_type_";
511
512
513
514
515
516
  return true;
}

void HeteroGraph::Save(dmlc::Stream* fs) const {
  fs->Write(kDGLSerialize_HeteroGraph);
  auto meta_graph_ptr = ImmutableGraph::ToImmutable(meta_graph());
517
518
519
  fs->Write(meta_graph_ptr);
  fs->Write(relation_graphs_);
  fs->Write(num_verts_per_type_);
520
521
}

522
523
524
525
526
527
528
529
GraphPtr HeteroGraph::AsImmutableGraph() const {
  CHECK(NumVertexTypes() == 1) << "graph has more than one node types";
  CHECK(NumEdgeTypes() == 1) << "graph has more than one edge types";
  auto unit_graph = CHECK_NOTNULL(
      std::dynamic_pointer_cast<UnitGraph>(GetRelationGraph(0)));
  return unit_graph->AsImmutableGraph();
}

530
531
532
533
534
535
536
537
538
539
540
541
HeteroGraphPtr HeteroGraph::LineGraph(bool backtracking) const {
  CHECK_EQ(1, meta_graph_->NumEdges()) << "Only support Homogeneous graph now (one edge type)";
  CHECK_EQ(1, meta_graph_->NumVertices()) << "Only support Homogeneous graph now (one node type)";
  CHECK_EQ(1, relation_graphs_.size()) << "Only support Homogeneous graph now";
  UnitGraphPtr ug = relation_graphs_[0];

  const auto &ulg = ug->LineGraph(backtracking);
  std::vector<HeteroGraphPtr> rel_graph = {ulg};
  std::vector<int64_t> num_nodes_per_type = {static_cast<int64_t>(ulg->NumVertices(0))};
  return HeteroGraphPtr(new HeteroGraph(meta_graph_, rel_graph, std::move(num_nodes_per_type)));
}

542
}  // namespace dgl