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Signed-off-by: Reese Wang <rewang@nvidia.com>

* Use cudaMemsetAsync and enhance the error handling
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add flash attention kernel elts_per_thread update
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove redundant max 512 suffix
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Keep only DType and remove NVTEDType from python
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix a float32_attention_logits bugs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Re-calculate workspace size for self attention
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enhance bias/dbias shape guard
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enhance the seed/rng_state checker
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Use jax.core.ShapedArray as jax.abstract_arrays is deprecated
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enhance the unittest docs
Signed-off-by: Reese Wang <rewang@nvidia.com>

---------
Signed-off-by: Reese Wang <rewang@nvidia.com>

bugfix for softmax lowering
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add mp example
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* update doc-string
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* better FP8 checker
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* update readme
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace te.* with te.flax* to remove deprecated warning
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove nouse os.environ
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove nouse
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix typo
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/test_multiprocessing_encoder.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove cuda-python
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* adjust readme
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Signed-off-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix cpp lint

fix issue of "Could not find a newline character at the end of the file."
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix AssertionError: 1 GPU per process
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace tfds with datasets

The Flax application crash if it use TensorFlow Dataset (tfds) in NVIDIA JAX container.
The tfds is very useful for downloading well-knwon dataset (e.g., MNIST, GLUE) and commonly used by TF/JAX community.
However, it seems like that it is NOT compatible with NVIDIA TensorFlow in NVIDIA JAX container and somehow affects JAX.
It triggers random errors at JAX initialization depending on different versions, and make CI unstable.
Thus, this commit replaces tfds with "huggingface datasets" to download needed datasets.
See "nvbugs 4039266" for more details.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix input sharding

Unlike SPMD mode, in multiprocessing mode, the input tensor must be sharded manually.
Using DP=4, TP=2 as an example, the device mesh looks like:

mesh.device_ids = [[0, 1],
                   [2, 3],
                   [4, 5],
                   [6, 7]]

Assume that the process ID is mapped to GPU ID.
The process 0 and process 1 are grouped for model parallelism,
process 2 and process 3 are grouped together too, and so on.

The process 0 and process 1 need to share the same micro-batch in the training step,
process 0 and process 2, 4, and 6 have different micro-batch.

Thus, `shard_array_wrapper` partitions inputs to 4 parts (and setup
needed arguments for jax.make_array_from_single_device_arrays).
The process 0 and process 1 take the first quarter,
process 2 and process 3 take the second quarter, and so on.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor UT for multiprocess example

Use Python `multiprocessing` to test the multiprocessing example,
if the system has multiple GPU. 1 GPU per process.

Because `jax.distributed.initialize` must be called before any other JAX or Flax API,
GPU info cannot be queried by calling jax.local_devices() in TestEncoder.
Thus, `unittest_query_gpu()` forks another process to query number of GPUs and
FP8 capability.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove nouse arg `--num-gpu`

JAX doesn't have an API to setup number of GPU used in SPMD mode.
The only way is to use `CUDA_VISIBLE_DEVICES` for now.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix typo
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix ut
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* simplify the mask setting
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* increase batch-size for multigpu example

The batch-size 64 is too small to be partitioned for 8xH100.
If batch-size is 64, the GEMM shape is 256x8192x8 per GPU.
The 8 is too small for FP8 GEMM kernel, and
cuBLASLt will throw "Failed to query heuristics".
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix downloading mnist error

To download MNIST via `huggingface datasets`, it requires Pillow.
Otherwise, it throws `An error occurred while generating the
dataset`
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

---------
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>

* Add fused attention unit tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Use NVTE_* enums
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Use NVTE_Mask_Type and remove FMHADescriptor
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Move common functions to utils
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Change namespace to fused_attn
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Move fused_attn_max_512_fwd_qkvpacked under the general APIs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add fused_attn_max_512_bwd_qkvpacked
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Move fused_attn_max_512_bwd_qkvpacked under the general APIs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove redundant blank line
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix a potential bug for cu_seqlen converter
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Reformat fused_attn_max_512
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Refine the unfused attention warning message
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Rename to fused_attn_max_512
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove the deprecated header
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix flax import
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Rename to fused attn
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add attention related mask
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add attn_mask_type and attn_bias_type
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Refactor jax primitive API
* Merge q_cu_seqlen and kv_cu_seqlen
* Remove is_causal_masking
* Replace seed with rng_state
* Add is_training argument
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove dsoftmax from the customcall
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add None guard for bias and dropout_rng
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add version guard
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add is_fused_attn_kernel_available() to correctly dispatch the attention impl
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix the merge conflict
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Adjust the code style
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add the missing blank lines
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Change the order of FADescriptor members
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enhance the readability of fused_attn_max_512.cu
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Generalize the input dimension unpacking
Signed-off-by: Reese Wang <rewang@nvidia.com>

* 16 bits fused attention requires 8.9.1
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Update fused attention support matrix
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Handle None type when sharding
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Change to the padding ratio
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Performance optimization for non-bias cases
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Revert the cudnn-frontend PRIVATE keyword which was used for debugging
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Revert "Update fused attention support matrix"

This reverts commit 4effe67d0f08f733919a329ce5ab421958740f4a.
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Treat b * s as total_seqs to align ragged cases
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add FP16/BF16 max_seqlen <= 512 fused attention to the support matrix
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Refine test_fused_attn.py

* Replace reference code with flax.linen
* Remove unnecessary comments
* Use AttnMaskType
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Unify the cuDNN compile version
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add dropout to the support matrix
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Slightly adjust the headers
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Typo fix: remove redundant either
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Consolidating fused attention requirements
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Replace cudnn_frontend::throw_if with NVTE_CHECK for the better error line report
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Rename to fused_attn_fp16_bf16_max_seqlen_512 for the better readability
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove CUDNN_FRONTEND_UNUSED
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add more annotations to the custom calls
Signed-off-by: Reese Wang <rewang@nvidia.com>

---------
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Updated TE/JAX docs
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Adding TE/JAX docs' rst files
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Set DType as pybind11::module_local() to avoid generic_type errors.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Updating license and exporting more modules
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Adopting autoapi and removing enum_tools.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Fix typo
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>

* Make jax.rst be style consistent.
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>

* Fixing doc statements as the suggestion from review.
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>

* Fixing doc statements as the suggestion from code review.
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>

* Update the description of Softmax
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>

* Removed categories in catalog as PyTorch
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>

---------
Signed-off-by: Ming Huang <mingh@nvidia.com>
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>

* add building workflow for jax modules
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace bit_cast with reinterpret_cast
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add nvtx to cmake check list
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor rmsnorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm_bwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* set pytorch as default in setup.py
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* rename extension from *.cc to *.cpp

cpplint cannot recognize *.cc file, so rename the extension
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor style, to align TE/PyTorch
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add pybinding, unittest and qa
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix license
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* disable c-extension-no-member and no-name-in-module
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add dataclass avoid pylint error
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update transformer_engine/__init__.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py

fix typo
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* add building workflow for jax modules
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace bit_cast with reinterpret_cast
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add nvtx to cmake check list
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor rmsnorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm_bwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* set pytorch as default in setup.py
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* rename extension from *.cc to *.cpp

cpplint cannot recognize *.cc file, so rename the extension
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor style, to align TE/PyTorch
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add pybinding, unittest and qa
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix license
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* disable c-extension-no-member and no-name-in-module
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add dataclass avoid pylint error
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update transformer_engine/__init__.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py

fix typo
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* fix conflict due to PR62
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix c-extension-no-member and no-name-in-module

1. add transformer_engine_jax into extension-pkg-whitelist
2. convert pylintrc from CRLF to LF format
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update setup.py
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* remove pylint:disable and refactor import order
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

---------
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>