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Still need further debugging:
FAILED test_fused_attn.py::TestFusedAttn::test_backward[NO_SWA-DROP_0.0-4-128-256-16-16-64-BF16-CROSS-KV_PACKED-NO_MASK-NO_BIAS] - AssertionError:
FAILED test_fused_attn.py::TestFusedAttn::test_backward[NO_SWA-DROP_0.0-4-128-256-16-16-64-BF16-CROSS-KV_PACKED-NO_MASK-POST_SCALE_BIAS-1HSS] - AssertionError:
FAILED test_fused_attn.py::TestFusedAttn::test_backward[NO_SWA-DROP_0.0-4-128-256-16-16-64-BF16-CROSS-SEPARATE-NO_MASK-NO_BIAS] - AssertionError:
FAILED test_fused_attn.py::TestFusedAttn::test_backward[NO_SWA-DROP_0.0-4-128-256-16-16-64-BF16-CROSS-SEPARATE-NO_MASK-POST_SCALE_BIAS-1HSS] - AssertionError:

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* fixed compile errors after PR653 merge
Signed-off-by: Alp Dener <adener@nvidia.com>

* updated JAX unittests for new bias shapes
Signed-off-by: Alp Dener <adener@nvidia.com>

* fixed mismatched mask type checking
Signed-off-by: Alp Dener <adener@nvidia.com>

* corrected skip condition
Signed-off-by: Alp Dener <adener@nvidia.com>

* fix selection logic for A100s
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* corrected skip checks for bias shapes
Signed-off-by: Alp Dener <adener@nvidia.com>

* resolved test issues but neginf with float16 is still problematic with JAX
Signed-off-by: Alp Dener <adener@nvidia.com>

* new bias shapes passing TE JAX CI for seqlen <= 512, seq_q == seq_kv and h_q == h_kv conditions
Signed-off-by: Alp Dener <adener@nvidia.com>

* TE/JAX fused attn tests for new bias shapes passing with neg_inf=-2**27 for Bfloat16 and -2**15 for Float16
Signed-off-by: Alp Dener <adener@nvidia.com>

* code style fixes and test parameter ID cleanup
Signed-off-by: Alp Dener <adener@nvidia.com>

* fixed incorrect skip condition for backward fused attn test
Signed-off-by: Alp Dener <adener@nvidia.com>

---------
Signed-off-by: Alp Dener <adener@nvidia.com>
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>
Co-authored-by: Alp Dener <adener@nvidia.com>

* Refine MHA API
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Reuse func from the flax
Signed-off-by: Reese Wang <rewang@nvidia.com>

* DPA draft
Signed-off-by: Reese Wang <rewang@nvidia.com>

* qkv packed draft
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix test_layer with fused attn
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add attn_bias_type and enhance a few code flow
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Move scale_factor from __call__ to init
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enhance the docs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add DPA public API and tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Refine docs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Refine docs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix conflict
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add qkv separate fused attn
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Apply BSHD_BSHD_BSHD format
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove debug log
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add fused attention layer tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add NVTE_FUSED_ATTN docs
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fine-grained fused attn settings
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove the default value of num_attetnion_head and head_dim
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add teardown for fused attn env
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Unify the Optional notation
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix Pre/Post scale bias comments
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add no_mask tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add checkpoint_name for fused attn
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix the fused attn batcher
Signed-off-by: Reese Wang <rewang@nvidia.com>

---------
Signed-off-by: Reese Wang <rewang@nvidia.com>

Signed-off-by: hugo-syn <hugo.vincent@synacktiv.com>

* Support num_gqa_groups arguments
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add GQA support on the JAX bridge code
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix the kv stride of the arbitrary backend
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Complete rewrite fused attention tests and add GQA coverage
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Support unfused GQA
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Calculate seqlen before the primitive for the better perf
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add GQA layer tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Apply code style checks for te_jax
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Apply code style checks for tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add num_gqa_groups doc
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Refine the qkv_type
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Correct the variable naming
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Handle Max512 CAUSAL
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add WAR for the latest jax image
Signed-off-by: Reese Wang <rewang@nvidia.com>

---------
Signed-off-by: Reese Wang <rewang@nvidia.com>

Signed-off-by: Przemek Tredak <ptredak@nvidia.com>

* Integrate cuDNN frontend v1 to fused attention and miscellaneous fixes
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix lint
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix jax/paddle for unit tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix jax/pytorch lint
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* simplify stride generation
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix and/or logic in get_backend
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix flag_max512 and test_numerics
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove v.contiguous() since get_qkv_layout covers it
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* skip fp8 tests for sm89
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* further fix jax CI
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix jax CI
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* revert mask type to comma-separated list
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix lint
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix last two commits
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* integrate v1/pre-release-5
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* cleanup prerelease5 integration and fix FA2.1 commit
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* force dropout to 0 if not training
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix Jax CI
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* testing bias/alibi and padding+causal; add alibi to unfused DPA
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* set flag_arb to false when non determinism is not allowed
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* followup on prev commit; remove redundant python env var setting
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* WIP: minor tweaks for tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* prepare for tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix determinism logic for fused attn
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* add bias to bwd
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix gpt_checkpointing/dpa_accuracy problem
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix some seg fault issues
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* add failure notes
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove use of non-deter var for backend selection
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* minor fix for lint and CI
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix workspace size in bwd and uncomment bias test
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix get_alibi and remove check_support
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* update tests status
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove workspace_opt from FADescriptor_v1
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* disable arbitrary backend + post scale bias in Jax; waiting on PR 525
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* clean up bhsd order
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* swap bias/rng_state order in aux_ctx_tensor and add bias to aux_ctx_tensor in _qkvpacked/_kvpacked API
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove support for padding_causal + cross for max512
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* change alibi bias to float32 for bias_1_4/5 tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* further clean up tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix thd fwd output shape for FlashAttention and add backend info for DPA
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix definition of workspace limit when dbias is present
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* further tweak DP_WORKSPACE_LIMIT definition
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* disallow alibi+no_mask for sdpa flash and update alibi tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* update jax/paddle after PR525 and fix DP_WORKSPACE_LIMIT for dbias Jax tests
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* disable dbias for non-hopper archs
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix layernorm lint
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remode unused arg for lint
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove build dir in setup.py
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* change selection logic to prefer fused attn on sm90
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix distributed jax test
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix h and s order in header
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* update to cudnn fe v1 branch
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove manual setting of workopt path due to dbias after v1 update
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix paddle CI
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* add post_scale_bias and alibi to sdpa flash support matrix
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix support matrix in header files
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* move headers back to .cu and change seed/offset to int64
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* update Megatron commit in L1 test and remove all prints in fused attn test
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix L1 Megatron test
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* fix fp8 arg in L1 Megatron script
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* print only when debug flag is on
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

* remove checkpointing loading to avoid loading other tests results
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>

---------
Signed-off-by: Charlene Yang <8636796+cyanguwa@users.noreply.github.com>
Signed-off-by: cyanguwa <8636796+cyanguwa@users.noreply.github.com>

* Add rng_state output for cross fused attention
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add rng_state and output for the flash attention backward
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add bias for the jax cross attn API
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix a minor bug
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add bias in the backward for the arbitrary fused attn backend
Signed-off-by: Reese Wang <rewang@nvidia.com>

---------
Signed-off-by: Reese Wang <rewang@nvidia.com>

[C/JAX] Support more mask types for the arbitrary seqlen kernels and minor changes of JAX bias (#469)

* Move bias to float32
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enable varlen
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Increase neg infinity abs values
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enable varlen tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove unnecessary code
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix lint
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Support variable sequence length after cuDNN 8.9.6
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Use unique_ptr instead of shared_ptr
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Add a new mask type: PADDING_CAUSAL_MASK
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Support flash padding mask after 8.9.6
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Enhance the Max512 handling for causal masking and add the related tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Update the fused attn support lists
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Remove padding_aware from the caching
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix libtransformer.so issue
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Reduce the pad ratio tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix a bug with cuDNN 8.9.5
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Release backend resource after the module level unit test
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Clean the jax live arrays before running the unit tests
Signed-off-by: Reese Wang <rewang@nvidia.com>

* Fix too-few-public-methods lint
Signed-off-by: Reese Wang <rewang@nvidia.com>

---------
Signed-off-by: Reese Wang <rewang@nvidia.com>