GitLab

* add mp example
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* update doc-string
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* better FP8 checker
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* update readme
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace te.* with te.flax* to remove deprecated warning
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove nouse os.environ
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove nouse
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix typo
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/test_multiprocessing_encoder.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove cuda-python
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* adjust readme
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update examples/jax/encoder/README.md
Signed-off-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix cpp lint

fix issue of "Could not find a newline character at the end of the file."
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix AssertionError: 1 GPU per process
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace tfds with datasets

The Flax application crash if it use TensorFlow Dataset (tfds) in NVIDIA JAX container.
The tfds is very useful for downloading well-knwon dataset (e.g., MNIST, GLUE) and commonly used by TF/JAX community.
However, it seems like that it is NOT compatible with NVIDIA TensorFlow in NVIDIA JAX container and somehow affects JAX.
It triggers random errors at JAX initialization depending on different versions, and make CI unstable.
Thus, this commit replaces tfds with "huggingface datasets" to download needed datasets.
See "nvbugs 4039266" for more details.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix input sharding

Unlike SPMD mode, in multiprocessing mode, the input tensor must be sharded manually.
Using DP=4, TP=2 as an example, the device mesh looks like:

mesh.device_ids = [[0, 1],
                   [2, 3],
                   [4, 5],
                   [6, 7]]

Assume that the process ID is mapped to GPU ID.
The process 0 and process 1 are grouped for model parallelism,
process 2 and process 3 are grouped together too, and so on.

The process 0 and process 1 need to share the same micro-batch in the training step,
process 0 and process 2, 4, and 6 have different micro-batch.

Thus, `shard_array_wrapper` partitions inputs to 4 parts (and setup
needed arguments for jax.make_array_from_single_device_arrays).
The process 0 and process 1 take the first quarter,
process 2 and process 3 take the second quarter, and so on.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor UT for multiprocess example

Use Python `multiprocessing` to test the multiprocessing example,
if the system has multiple GPU. 1 GPU per process.

Because `jax.distributed.initialize` must be called before any other JAX or Flax API,
GPU info cannot be queried by calling jax.local_devices() in TestEncoder.
Thus, `unittest_query_gpu()` forks another process to query number of GPUs and
FP8 capability.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove nouse arg `--num-gpu`

JAX doesn't have an API to setup number of GPU used in SPMD mode.
The only way is to use `CUDA_VISIBLE_DEVICES` for now.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix typo
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix ut
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* simplify the mask setting
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* increase batch-size for multigpu example

The batch-size 64 is too small to be partitioned for 8xH100.
If batch-size is 64, the GEMM shape is 256x8192x8 per GPU.
The 8 is too small for FP8 GEMM kernel, and
cuBLASLt will throw "Failed to query heuristics".
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix downloading mnist error

To download MNIST via `huggingface datasets`, it requires Pillow.
Otherwise, it throws `An error occurred while generating the
dataset`
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

---------
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Signed-off-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>

* Adjust Module Structure.

1. Collect Flax related modules to a sub-folder, flax.
2. Add a function to unify scale_init for zero-centered-gamma LN.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Make changes be compatible to previous versions.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Adapt jax/examples to the new module structure.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Update jax/docs and Add deprecated warning.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Update README
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Adding deprecated_wrapper
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Adding deprecated warning to flax modules which imported via transformer_engine.jax
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Fix CI errors and update docs.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Removing unnecessary deprecated warning in docs.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Implementing __iter__ to DeprecatedEnum.
Signed-off-by: Ming Huang <mingh@nvidia.com>

---------
Signed-off-by: Ming Huang <mingh@nvidia.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>

* Support transpose_bs when decoded=True
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Fix Bugs,

1. Fix missing dropout_dims in LayerNormMLP.
2. Fix broadcast issues in decoded.
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Fix wrong masks in decoded.
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Fixed wrong assert condition in TransformerLayer
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Fix amax is not set as 0 in each step.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* Enhance rules conflict checking and docs.
Signed-off-by: Ming Huang <mingh@nvidia.com>

* fix code formatting.
Signed-off-by: Ming Huang <mingh@nvidia.com>

---------
Signed-off-by: Ming-Xu Huang <mingh@nvidia.com>
Signed-off-by: Ming Huang <mingh@nvidia.com>

* add transformer module , unittests and examples
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update tests/jax/test_sharding.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update transformer_engine/jax/transformer.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* remove pylint: disable=line-too-long
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove pylint: disable=too-many-func-args
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Fix the wrong broadcasting dim to dropout masks when enable transpose_bs.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Enable 2xACC for WGRAD and DGRAD by default
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* rename LayerNormMlpBlock as LayerNormMLP
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor to avoid line-too-long
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* rename amax_history_size to amax_history_len
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* align dropout mask to TE/PyTorch as default
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* enlarge atol for decoder unittests

Two decoder unittests can pass in old JAX container(e.g., 23.02)
but can't in latest container (devel).

1. The actual(-0.020264) and desired(-0.020386) are very close.
2. The TE kernels are not changed, the diff should come from
   new codegen behavior of XLA.

Thus, it is a common floating-point accumulated error.
Enlarge atol to avoid unittest failures.
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Adding Amax History Support

1. hide amax update in custom_vjp
2. replace amax indexing with roll(using circular buffer)
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* move kernel_init to __post_init__
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor encoder examples
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update transformer_engine/jax/fp8.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update transformer_engine/jax/fp8.py
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* remove envvar regarding 2xACC
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* remove unused import
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

---------
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Co-authored-by: Ming-Xu Huang <mingh@nvidia.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>

* add building workflow for jax modules
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace bit_cast with reinterpret_cast
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add nvtx to cmake check list
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor rmsnorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm_bwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* set pytorch as default in setup.py
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* rename extension from *.cc to *.cpp

cpplint cannot recognize *.cc file, so rename the extension
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor style, to align TE/PyTorch
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add pybinding, unittest and qa
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix license
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* disable c-extension-no-member and no-name-in-module
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add dataclass avoid pylint error
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update transformer_engine/__init__.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py

fix typo
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* add building workflow for jax modules
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* replace bit_cast with reinterpret_cast
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add nvtx to cmake check list
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor rmsnorm fwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor layernorm_bwd
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* set pytorch as default in setup.py
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* rename extension from *.cc to *.cpp

cpplint cannot recognize *.cc file, so rename the extension
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* refactor style, to align TE/PyTorch
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add pybinding, unittest and qa
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix license
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* disable c-extension-no-member and no-name-in-module
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* add dataclass avoid pylint error
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update transformer_engine/__init__.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py

fix typo
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* Update tests/jax/test_custom_call_shape.py
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* fix conflict due to PR62
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* fix c-extension-no-member and no-name-in-module

1. add transformer_engine_jax into extension-pkg-whitelist
2. convert pylintrc from CRLF to LF format
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

* Update setup.py
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>

* remove pylint:disable and refactor import order
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>

---------
Signed-off-by: Ryan Jeng <rjeng@nvidia.com>
Signed-off-by: Jeng Bai-Cheng <jeng1220@users.noreply.github.com>
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
Co-authored-by: Kirthi Shankar Sivamani <ksivamani@nvidia.com>