""" Copyright 2020 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. """ from loguru import logger from typing import List, Tuple, Sequence from nndet.io.transforms import Mirror, NoOp from rising.transforms import AbstractTransform def get_tta_transforms(num_tta_transforms: int, seg: bool = True) -> Tuple[ List[AbstractTransform], List[AbstractTransform]]: """ Get tta transformations Args: num_tta_transforms: number of tta transformations; 0: no tta, 4: augments all directions in 2D, 8: augments all directions in 3D Returns: List[AbstractTransform]: transforms for TTA List[AbstractTransform]: inverted transformations for TTA """ transforms = [NoOp()] inverse_transforms = [NoOp()] mirror_keys = ["data"] pred_mirror_keys = ["pred_seg"] if seg else ["pred_seg"] boxes_mirror_keys = ["pred_boxes"] if num_tta_transforms >= 4: logger.info("Adding 2D Mirror TTA for prediction.") transforms.append(Mirror(keys=mirror_keys, dims=(0,))) transforms.append(Mirror(keys=mirror_keys, dims=(1,))) transforms.append(Mirror(keys=mirror_keys, dims=(0, 1))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(0,))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(1,))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(0, 1))) if num_tta_transforms >= 8: logger.info("Adding 3D Mirror TTA for prediction.") transforms.append(Mirror(keys=mirror_keys, dims=(2,))) transforms.append(Mirror(keys=mirror_keys, dims=(0, 2))) transforms.append(Mirror(keys=mirror_keys, dims=(1, 2))) transforms.append(Mirror(keys=mirror_keys, dims=(0, 1, 2))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(2,))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(0, 2))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(1, 2))) inverse_transforms.append(Mirror(keys=pred_mirror_keys, box_keys=boxes_mirror_keys, dims=(0, 1, 2))) return transforms, inverse_transforms class Inference2D(AbstractTransform): def __init__(self, keys: Sequence[str], ): """ Helper transform to run inference with 2d models Args: keys: data keys to remove dimension from for inference """ super().__init__(grad=False) self.keys = keys def forward(self, **data) -> dict: """ Removes first spatial dimension (N, C, [removed], ax1, ax2) Args: **data: intput batch Returns: dict: transformed batch """ for key in self.keys: data[key] = data[key][:, :, 0] return data