""" Copyright 2020 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. """ import numpy as np from typing import Dict, List from collections import defaultdict, OrderedDict from nndet.io.load import load_properties_of_cropped from nndet.planning.analyzer import DatasetAnalyzer def get_sizes_and_spacings_after_cropping(analyzer: DatasetAnalyzer) -> Dict[str, List]: """ Load all sizes and spacings after cropping Args: analyzer: analyzer which calls this property Returns: Dict[str, List]: loaded sizes and spacings inside list `all_sizes`: contains all sizes `all_spacings`: contains all spacings """ output = defaultdict(list) for case_id in analyzer.case_ids: properties = load_properties_of_cropped(analyzer.cropped_data_dir / case_id) output['all_sizes'].append(properties["size_after_cropping"]) output['all_spacings'].append(properties["original_spacing"]) return output def get_size_reduction_by_cropping(analyzer: DatasetAnalyzer) -> Dict[str, Dict]: """ Compute all size reductions of each case Args: analyzer: analzer which calls this property Returns: Dict: computed size reductions `size_reductions`: dictionary with each case id and reduction """ size_reduction = OrderedDict() for case_id in analyzer.case_ids: props = load_properties_of_cropped(analyzer.cropped_data_dir / case_id) shape_before_crop = props["original_size_of_raw_data"] shape_after_crop = props['size_after_cropping'] size_red = np.prod(shape_after_crop) / np.prod(shape_before_crop) size_reduction[case_id] = size_red return {"size_reductions": size_reduction}