""" Copyright 2020 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. """ import json from pathlib import Path import yaml from hydra.experimental import compose as hydra_compose from nndet.io.paths import Pathlike, get_task def load_dataset_info(task_dir: Pathlike) -> dict: """ Load dataset information from a given task directory Args: task_dir: path to directory of specific task e.g. ../Task12_LIDC Returns: dict: loaded dataset info. Typically includes: `name` (str): name of dataset `target_class` (str) """ task_dir = Path(task_dir) yaml_path = task_dir / "dataset.yaml" json_path = task_dir / "dataset.json" if yaml_path.is_file(): with open(yaml_path, 'r') as f: data = yaml.full_load(f) elif json_path.is_file(): with open(json_path, "r") as f: data = json.load(f) else: raise RuntimeError(f"Did not find dataset.json or dataset.yaml in {task_dir}") return data def compose(task, *args, models: bool = False, **kwargs) -> dict: from omegaconf import OmegaConf cfg = hydra_compose(*args, **kwargs) OmegaConf.set_struct(cfg, False) task_name = get_task(task, name=True, models=models) cfg["task"] = task_name cfg["data"] = load_dataset_info(get_task(task_name)) return cfg