#ifndef OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_ #define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_ /* -------------------------------------------------------------------------- * * AmoebaOpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2009 Stanford University and the Authors. * * Authors: * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Force.h" #include #include "openmm/internal/windowsExport.h" namespace OpenMM { /** * This class implements the Amoeba Out-of-plane bend interaction * To use it, create a OutOfPlaneBendForce object then call addOutOfPlaneBend() once for each outOfPlaneBend. After * a outOfPlaneBend has been added, you can modify its force field parameters by calling setOutOfPlaneBendParameters(). */ class OPENMM_EXPORT AmoebaOutOfPlaneBendForce : public Force { public: /** * Create a Amoeba OutOfPlaneBendForce. */ AmoebaOutOfPlaneBendForce(); /** * Get the number of outOfPlaneBend terms in the potential function */ int getNumOutOfPlaneBends() const { return outOfPlaneBends.size(); } /** * Set the global cubic term * * @param cubicK the cubic harmonic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendCubic( double cubicK ); /** * Get the global cubic term * * @return global cubicK term */ double getAmoebaGlobalOutOfPlaneBendCubic( void ) const; /** * Set the global cubic term * * @param quarticK the quartic harmonic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendQuartic( double quarticK ); /** * Get the global quartic term * * @return global quartic term */ double getAmoebaGlobalOutOfPlaneBendQuartic( void ) const; /** * Set the global pentic term * * @param penticK the pentic harmonic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendPentic( double penticK ); /** * Get the global pentic term * * @return global penticK term */ double getAmoebaGlobalOutOfPlaneBendPentic( void ) const; /** * Set the global sextic term * * @param sexticK the sextic harmonic force constant for the angle */ void setAmoebaGlobalOutOfPlaneBendSextic( double sexticK ); /** * Get the global sextic term * * @return global sexticK term */ double getAmoebaGlobalOutOfPlaneBendSextic( void ) const; /** * Add a outOfPlaneBend term to the force field. * * @param particle1 the index of the first particle connected by the outOfPlaneBend * @param particle2 the index of the second particle connected by the outOfPlaneBend * @param particle3 the index of the third particle connected by the outOfPlaneBend * @param particle4 the index of the fourth particle connected by the outOfPlaneBend * @param k the force constant for the outOfPlaneBend * @return the index of the outOfPlaneBend that was added */ int addOutOfPlaneBend(int particle1, int particle2, int particle3, int particle4, double k ); /** * Get the force field parameters for a outOfPlaneBend term. * * @param index the index of the outOfPlaneBend for which to get parameters * @param particle1 the index of the first particle connected by the outOfPlaneBend * @param particle2 the index of the second particle connected by the outOfPlaneBend * @param particle3 the index of the third particle connected by the outOfPlaneBend * @param particle4 the index of the fourth particle connected by the outOfPlaneBend * @param k the force constant for the outOfPlaneBend */ void getOutOfPlaneBendParameters(int index, int& particle1, int& particle2, int& particle3, int& particle4, double& k ) const; /** * Set the force field parameters for a outOfPlaneBend term. * * @param index the index of the outOfPlaneBend for which to set parameters * @param particle1 the index of the first particle connected by the outOfPlaneBend * @param particle2 the index of the second particle connected by the outOfPlaneBend * @param particle3 the index of the third particle connected by the outOfPlaneBend * @param particle4 the index of the fourth particle connected by the outOfPlaneBend * @param k the force constant for the outOfPlaneBend */ void setOutOfPlaneBendParameters(int index, int particle1, int particle2, int particle3, int particle4, double k ); protected: ForceImpl* createImpl(); double _globalCubicK, _globalQuarticK, _globalPenticK, _globalSexticK; private: class OutOfPlaneBendInfo; // Retarded visual studio compiler complains about being unable to // export private stl class members. // This stanza explains that it should temporarily shut up. #if defined(_MSC_VER) #pragma warning(push) #pragma warning(disable:4251) #endif std::vector outOfPlaneBends; #if defined(_MSC_VER) #pragma warning(pop) #endif }; class AmoebaOutOfPlaneBendForce::OutOfPlaneBendInfo { public: int particle1, particle2, particle3, particle4; double k; OutOfPlaneBendInfo() { particle1 = particle2 = particle3 = particle4 = -1; k = 0.0; } OutOfPlaneBendInfo(int particle1, int particle2, int particle3, int particle4, double k ) : particle1(particle1), particle2(particle2), particle3(particle3), particle4(particle4), k(k) { } }; } // namespace OpenMM #endif /*OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_*/