/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2012 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ /** * This tests the CUDA implementation of CustomAngleForce. */ #include "openmm/internal/AssertionUtilities.h" #include "openmm/Context.h" #include "CudaPlatform.h" #include "openmm/CustomAngleForce.h" #include "openmm/HarmonicAngleForce.h" #include "openmm/System.h" #include "openmm/VerletIntegrator.h" #include "sfmt/SFMT.h" #include #include using namespace OpenMM; using namespace std; const double TOL = 1e-5; void testAngles() { CudaPlatform platform; // Create a system using a CustomAngleForce. System customSystem; customSystem.addParticle(1.0); customSystem.addParticle(1.0); customSystem.addParticle(1.0); customSystem.addParticle(1.0); CustomAngleForce* custom = new CustomAngleForce("scale*k*(theta-theta0)^2"); custom->addPerAngleParameter("theta0"); custom->addPerAngleParameter("k"); custom->addGlobalParameter("scale", 0.5); vector parameters(2); parameters[0] = 1.5; parameters[1] = 0.8; custom->addAngle(0, 1, 2, parameters); parameters[0] = 2.0; parameters[1] = 0.5; custom->addAngle(1, 2, 3, parameters); customSystem.addForce(custom); // Create an identical system using a HarmonicAngleForce. System harmonicSystem; harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); HarmonicAngleForce* harmonic = new HarmonicAngleForce(); harmonic->addAngle(0, 1, 2, 1.5, 0.8); harmonic->addAngle(1, 2, 3, 2.0, 0.5); harmonicSystem.addForce(harmonic); // Set the atoms in various positions, and verify that both systems give identical forces and energy. OpenMM_SFMT::SFMT sfmt; init_gen_rand(0, sfmt); vector positions(4); VerletIntegrator integrator1(0.01); VerletIntegrator integrator2(0.01); Context c1(customSystem, integrator1, platform); Context c2(harmonicSystem, integrator2, platform); for (int i = 0; i < 10; i++) { for (int j = 0; j < (int) positions.size(); j++) positions[j] = Vec3(5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt)); c1.setPositions(positions); c2.setPositions(positions); State s1 = c1.getState(State::Forces | State::Energy); State s2 = c2.getState(State::Forces | State::Energy); for (int i = 0; i < customSystem.getNumParticles(); i++) ASSERT_EQUAL_VEC(s1.getForces()[i], s2.getForces()[i], TOL); ASSERT_EQUAL_TOL(s1.getPotentialEnergy(), s2.getPotentialEnergy(), TOL); } // Try changing the angle parameters and make sure it's still correct. parameters[0] = 1.6; parameters[1] = 0.9; custom->setAngleParameters(0, 0, 1, 2, parameters); parameters[0] = 2.1; parameters[1] = 0.6; custom->setAngleParameters(1, 1, 2, 3, parameters); custom->updateParametersInContext(c1); harmonic->setAngleParameters(0, 0, 1, 2, 1.6, 0.9); harmonic->setAngleParameters(1, 1, 2, 3, 2.1, 0.6); harmonic->updateParametersInContext(c2); { for (int j = 0; j < (int) positions.size(); j++) positions[j] = Vec3(5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt)); c1.setPositions(positions); c2.setPositions(positions); State s1 = c1.getState(State::Forces | State::Energy); State s2 = c2.getState(State::Forces | State::Energy); for (int i = 0; i < customSystem.getNumParticles(); i++) ASSERT_EQUAL_VEC(s1.getForces()[i], s2.getForces()[i], TOL); ASSERT_EQUAL_TOL(s1.getPotentialEnergy(), s2.getPotentialEnergy(), TOL); } } void testParallelComputation() { CudaPlatform platform; System system; const int numParticles = 200; for (int i = 0; i < numParticles; i++) system.addParticle(1.0); CustomAngleForce* force = new CustomAngleForce("(theta-1.1)^2"); vector params; for (int i = 2; i < numParticles; i++) force->addAngle(i-2, i-1, i, params); system.addForce(force); vector positions(numParticles); for (int i = 0; i < numParticles; i++) positions[i] = Vec3(i, i%2, 0); VerletIntegrator integrator1(0.01); Context context1(system, integrator1, platform); context1.setPositions(positions); State state1 = context1.getState(State::Forces | State::Energy); VerletIntegrator integrator2(0.01); string deviceIndex = platform.getPropertyValue(context1, CudaPlatform::CudaDeviceIndex()); map props; props[CudaPlatform::CudaDeviceIndex()] = deviceIndex+","+deviceIndex; Context context2(system, integrator2, platform, props); context2.setPositions(positions); State state2 = context2.getState(State::Forces | State::Energy); ASSERT_EQUAL_TOL(state1.getPotentialEnergy(), state2.getPotentialEnergy(), 1e-5); for (int i = 0; i < numParticles; i++) ASSERT_EQUAL_VEC(state1.getForces()[i], state2.getForces()[i], 1e-5); } int main() { try { testAngles(); // testParallelComputation(); } catch(const exception& e) { cout << "exception: " << e.what() << endl; return 1; } cout << "Done" << endl; return 0; }