/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "OpenMMException.h" #include "State.h" using namespace OpenMM; using namespace std; double State::getTime() const { return time; } const vector& State::getPositions() const { if (types&Positions == 0) throw OpenMMException("Invoked getPositions() on a State which does not contain positions."); return positions; } const vector& State::getVelocities() const { if (types&Velocities == 0) throw OpenMMException("Invoked getVelocities() on a State which does not contain velocities."); return velocities; } const vector& State::getForces() const { if (types&Forces== 0) throw OpenMMException("Invoked getForces() on a State which does not contain forces."); return forces; } double State::getKineticEnergy() const { if (types&Energy== 0) throw OpenMMException("Invoked getKineticEnergy() on a State which does not contain energies."); return ke; } double State::getPotentialEnergy() const { if (types&Energy== 0) throw OpenMMException("Invoked getPotentialEnergy() on a State which does not contain energies."); return pe; } const map& State::getParameters() const { if (types&Parameters== 0) throw OpenMMException("Invoked getParameters() on a State which does not contain parameters."); return parameters; } State::State(double time, int numAtoms, DataType types) : types(types), time(time), ke(0), pe(0), positions(types&Positions == 0 ? 0 : numAtoms), velocities(types&Velocities== 0 ? 0 : numAtoms), forces(types&Forces== 0 ? 0 : numAtoms) { } vector& State::updPositions() { return positions; } vector& State::updVelocities() { return velocities; } vector& State::updForces() { return forces; } map& State::updParameters() { return parameters; } void State::setEnergy(double kinetic, double potential) { ke = kinetic; pe = potential; }