/* Portions copyright (c) 2006 Stanford University and Simbios. * Contributors: Pande Group * * Permission is hereby granted, free of charge, to any person obtaining * a copy of this software and associated documentation files (the * "Software"), to deal in the Software without restriction, including * without limitation the rights to use, copy, modify, merge, publish, * distribute, sublicense, and/or sell copies of the Software, and to * permit persons to whom the Software is furnished to do so, subject * to the following conditions: * * The above copyright notice and this permission notice shall be included * in all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS * OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. * IN NO EVENT SHALL THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE * LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION * OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION * WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ #ifndef __ReferenceConstraint_H__ #define __ReferenceConstraint_H__ // --------------------------------------------------------------------------------------- class ReferenceConstraint { private: public: /**--------------------------------------------------------------------------------------- Constructor --------------------------------------------------------------------------------------- */ ReferenceConstraint( ); /**--------------------------------------------------------------------------------------- Destructor --------------------------------------------------------------------------------------- */ ~ReferenceConstraint( ); }; class ReferenceShakeConstraint : public ReferenceConstraint { private: // force heavy atom into index 0 int _atomIndices[2]; RealOpenMM _inverseMasses[2]; RealOpenMM _constraintDistance; public: /**--------------------------------------------------------------------------------------- Constructor @param atomIndex1 atom index 1 @param atomIndex2 atom index 2 @param distance distance constraint @param inverseMass1 inverseMass of atom 1 @param inverseMass2 inverseMass of atom 2 --------------------------------------------------------------------------------------- */ ReferenceShakeConstraint( int atomIndex1, int atomIndex2, RealOpenMM distance, RealOpenMM inverseMass1, RealOpenMM inverseMass2 ); /**--------------------------------------------------------------------------------------- Destructor --------------------------------------------------------------------------------------- */ ~ReferenceShakeConstraint( ); /**--------------------------------------------------------------------------------------- Get constraint distance @return distance --------------------------------------------------------------------------------------- */ RealOpenMM getConstraintDistance( void ); /**--------------------------------------------------------------------------------------- Get inverse mass of heavy atom @return inverse mass --------------------------------------------------------------------------------------- */ RealOpenMM getHeavyAtomInverseMass( void ); /**--------------------------------------------------------------------------------------- Get inverse mass of light atom @return inverse mass --------------------------------------------------------------------------------------- */ RealOpenMM getLightAtomInverseMass( void ); /**--------------------------------------------------------------------------------------- Get index of heavy atom @return index --------------------------------------------------------------------------------------- */ int getHeavyAtomIndex( void ); /**--------------------------------------------------------------------------------------- Get index of light atom @return index --------------------------------------------------------------------------------------- */ int getLightAtomIndex( void ); /**--------------------------------------------------------------------------------------- Print state @param message message @return ReferenceDynamics::DefaultReturn --------------------------------------------------------------------------------------- */ int printState( std::stringstream& message ); }; typedef std::vector ShakeVector; typedef ShakeVector::iterator ShakeVectorI; typedef std::map IntShakeMap; typedef IntShakeMap::iterator IntShakeMapI; // --------------------------------------------------------------------------------------- #endif // __ReferenceShakeConstraint_H__