/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2009 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/OpenMMException.h" #include "openmm/internal/ContextImpl.h" #include "openmm/internal/CustomExternalForceImpl.h" #include "openmm/kernels.h" #include using namespace OpenMM; using std::map; using std::pair; using std::vector; using std::set; using std::string; using std::stringstream; CustomExternalForceImpl::CustomExternalForceImpl(CustomExternalForce& owner) : owner(owner) { } CustomExternalForceImpl::~CustomExternalForceImpl() { } void CustomExternalForceImpl::initialize(ContextImpl& context) { kernel = context.getPlatform().createKernel(CalcCustomExternalForceKernel::Name(), context); // Check for errors in the specification of bonds. System& system = context.getSystem(); vector parameters; int numParameters = owner.getNumPerParticleParameters(); for (int i = 0; i < owner.getNumParticles(); i++) { int particle; owner.getParticleParameters(i, particle, parameters); if (particle < 0 || particle >= system.getNumParticles()) { stringstream msg; msg << "CustomExternalForce: Illegal particle index: "; msg << particle; throw OpenMMException(msg.str()); } if (parameters.size() != numParameters) { stringstream msg; msg << "CustomExternalForce: Wrong number of parameters for particle "; msg << i; throw OpenMMException(msg.str()); } } dynamic_cast(kernel.getImpl()).initialize(context.getSystem(), owner); } double CustomExternalForceImpl::calcForcesAndEnergy(ContextImpl& context, bool includeForces, bool includeEnergy) { return dynamic_cast(kernel.getImpl()).execute(context, includeForces, includeEnergy); } vector CustomExternalForceImpl::getKernelNames() { vector names; names.push_back(CalcCustomExternalForceKernel::Name()); return names; } map CustomExternalForceImpl::getDefaultParameters() { map parameters; for (int i = 0; i < owner.getNumGlobalParameters(); i++) parameters[owner.getGlobalParameterName(i)] = owner.getGlobalParameterDefaultValue(i); return parameters; }