#ifndef OPENMM_BROOK_INT_STREAM_INTERNAL_H_ #define OPENMM_BROOK_INT_STREAM_INTERNAL_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Peter Eastman, Mark Friedrichs * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "BrookStreamInternal.h" #include "brook/brook.hpp" namespace OpenMM { /** * Internalementation of int streams for the Brook platform */ class BrookIntStreamInternal : public BrookStreamInternal { public: /** * BrookIntStreamInternal constructor * * @param name stream name * @param size size of array * @param streamWidth stream width * @param type stream type (float, float2, ...) * @param inputDefaultDangleValue default dangle value * */ BrookIntStreamInternal( std::string name, int size, int streamWidth, BrookStreamInternal::DataType type, int dangleValue ); /** * BrookIntStreamInternal destructor * */ ~BrookIntStreamInternal( ); /** * Copy the contents of an array into this stream. * * @param array a pointer to the start of the array. The array is assumed to have the same length as this stream, * and to contain elements of the correct data type for this stream. If the stream has a compound data type, all * the values should be packed into a single array: all the values for the first element, followed by all the values * for the next element, etc. * */ void loadFromArray( const void* array ); /** * Copy the contents of an array into this stream. * * @param array a pointer to the start of the array. The array is assumed to have the same length as this stream, * and to contain elements of the correct data type for this stream. If the stream has a compound data type, all * the values should be packed into a single array: all the values for the first element, followed by all the values * for the next element, etc. * * @param baseType data type of input array (float, double, int) * */ void loadFromArray( const void* array, BrookStreamInternal::DataType baseType ); /** * Save data to input array * * @param array a pointer to the start of the array. The array is assumed to have the same length as this stream, * and to contain elements of the correct _data type for this stream. If the stream has a compound _data type, all * the values should be packed into a single array: all the values for the first element, followed by all the values * for the next element, etc. * * @throw exception if baseType not float or double * */ void saveToArray( void* array ); /** * Fill data w/ input value * * @param value to set array to * * */ void fillWithValue( void* value ); /** * Get data array * * @return data array */ void* getData( void ); /** * Get data * * @param readFromBoard if set, read values on board * * @return data array * */ void* getData( int readFromBoard ); /** * Get array of appropritate size for loading data * * @return data array -- user's responsibility to free */ void* getDataArray( void ); /* * Get contents of object * * * @param level level of dump * * @return string containing contents * * */ const std::string getContentsString( int level = 0 ) const; /** * BrookFloatStreamInternal constructor * * @param stopIndex index to stop sum * @param sum array of size=getWidth() * * @return DefaultReturnValue * * @throw exception if stopIndex is too large */ int sumByDimension( int stopIndex, double* sum ); private: int _dangleValue; int* _data; /* * Print array to file * * @param log log file * * @return DefaultReturnValue * * */ int _bodyPrintToFile( FILE* log, int maxPrint ); }; } // namespace OpenMM #endif /* OPENMM_BROOK_INT_STREAM_INTERNAL_H_ */