/* -------------------------------------------------------------------------- * * OpenMMAmoeba * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit. * * See https://openmm.org/development. * * * * Portions copyright (c) 2008-2009 Stanford University and the Authors. * * Authors: * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Force.h" #include "openmm/OpenMMException.h" #include "openmm/AmoebaWcaDispersionForce.h" #include "openmm/internal/AmoebaWcaDispersionForceImpl.h" #include using namespace OpenMM; AmoebaWcaDispersionForce::AmoebaWcaDispersionForce() { // Amoeba Water '03 vdW parameters (Diameters in Angstroms; Well depth in kcal/mole) // vdw 1 3.4050 0.1100 // vdw 2 2.6550 0.0135 0.910 // Convert kcal/mol to kJ/mol epso = 0.1100 * 4.184; epsh = 0.0135 * 4.184; // Convert A to nm. rmino = 1.7025e-1; rminh = 1.3275e-1; dispoff = 1.056e-1; // Convert water number density from water / A^3 to water / nm^3. awater = 0.033428e3; // No units. slevy = 1.0; shctd = 0.82; } int AmoebaWcaDispersionForce::addParticle(double radius, double epsilon) { parameters.push_back(WcaDispersionInfo(radius, epsilon)); return parameters.size()-1; } void AmoebaWcaDispersionForce::getParticleParameters(int particleIndex, double& radius, double& epsilon) const { radius = parameters[particleIndex].radius; epsilon = parameters[particleIndex].epsilon; } void AmoebaWcaDispersionForce::setParticleParameters(int particleIndex, double radius, double epsilon) { parameters[particleIndex].radius = radius; parameters[particleIndex].epsilon = epsilon; } double AmoebaWcaDispersionForce::getEpso() const { return epso; } double AmoebaWcaDispersionForce::getEpsh() const { return epsh; } double AmoebaWcaDispersionForce::getRmino() const { return rmino; } double AmoebaWcaDispersionForce::getRminh() const { return rminh; } double AmoebaWcaDispersionForce::getAwater() const { return awater; } double AmoebaWcaDispersionForce::getShctd() const { return shctd; } double AmoebaWcaDispersionForce::getDispoff() const { return dispoff; } double AmoebaWcaDispersionForce::getSlevy() const { return slevy; } void AmoebaWcaDispersionForce::setEpso(double inputEpso) { epso = inputEpso; } void AmoebaWcaDispersionForce::setEpsh(double inputEpsh) { epsh = inputEpsh; } void AmoebaWcaDispersionForce::setRmino(double inputRmino) { rmino = inputRmino; } void AmoebaWcaDispersionForce::setRminh(double inputRminh) { rminh = inputRminh; } void AmoebaWcaDispersionForce::setAwater(double inputAwater) { awater = inputAwater; } void AmoebaWcaDispersionForce::setShctd(double inputShctd) { shctd = inputShctd; } void AmoebaWcaDispersionForce::setDispoff(double inputDispoff) { dispoff = inputDispoff; } void AmoebaWcaDispersionForce::setSlevy(double inputSlevy) { slevy = inputSlevy; } ForceImpl* AmoebaWcaDispersionForce::createImpl() const { return new AmoebaWcaDispersionForceImpl(*this); } void AmoebaWcaDispersionForce::updateParametersInContext(Context& context) { dynamic_cast(getImplInContext(context)).updateParametersInContext(getContextImpl(context)); }