/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit. * * See https://openmm.org/development. * * * * Portions copyright (c) 2010-2024 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/OpenMMException.h" #include "openmm/internal/ContextImpl.h" #include "openmm/internal/CustomAngleForceImpl.h" #include "openmm/kernels.h" #include using namespace OpenMM; using std::map; using std::pair; using std::vector; using std::set; using std::string; using std::stringstream; CustomAngleForceImpl::CustomAngleForceImpl(const CustomAngleForce& owner) : owner(owner) { forceGroup = owner.getForceGroup(); } CustomAngleForceImpl::~CustomAngleForceImpl() { } void CustomAngleForceImpl::initialize(ContextImpl& context) { kernel = context.getPlatform().createKernel(CalcCustomAngleForceKernel::Name(), context); // Check for errors in the specification of bonds. const System& system = context.getSystem(); vector parameters; int numParameters = owner.getNumPerAngleParameters(); for (int i = 0; i < owner.getNumAngles(); i++) { int particle[3]; owner.getAngleParameters(i, particle[0], particle[1], particle[2], parameters); for (int j = 0; j < 3; j++) { if (particle[j] < 0 || particle[j] >= system.getNumParticles()) { stringstream msg; msg << "CustomAngleForce: Illegal particle index for an angle: "; msg << particle[j]; throw OpenMMException(msg.str()); } } if (parameters.size() != numParameters) { stringstream msg; msg << "CustomAngleForce: Wrong number of parameters for angle "; msg << i; throw OpenMMException(msg.str()); } } kernel.getAs().initialize(context.getSystem(), owner); } double CustomAngleForceImpl::calcForcesAndEnergy(ContextImpl& context, bool includeForces, bool includeEnergy, int groups) { if ((groups&(1<().execute(context, includeForces, includeEnergy); return 0.0; } vector CustomAngleForceImpl::getKernelNames() { return {CalcCustomAngleForceKernel::Name()}; } map CustomAngleForceImpl::getDefaultParameters() { map parameters; for (int i = 0; i < owner.getNumGlobalParameters(); i++) parameters[owner.getGlobalParameterName(i)] = owner.getGlobalParameterDefaultValue(i); return parameters; } void CustomAngleForceImpl::updateParametersInContext(ContextImpl& context, int firstAngle, int lastAngle) { kernel.getAs().copyParametersToContext(context, owner, firstAngle, lastAngle); context.systemChanged(); }