/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2025 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/internal/CustomVolumeForceImpl.h" #include "openmm/internal/ContextImpl.h" #include "lepton/ParsedExpression.h" #include "lepton/Parser.h" using namespace OpenMM; using namespace std; CustomVolumeForceImpl::CustomVolumeForceImpl(const CustomVolumeForce& owner) : CustomCPPForceImpl(owner), owner(owner) { Lepton::ParsedExpression expression = Lepton::Parser::parse(owner.getEnergyFunction()); energyExpression = expression.createCompiledExpression(); map variableLocations; globalParameterNames.resize(owner.getNumGlobalParameters()); globalValues.resize(owner.getNumGlobalParameters()); for (int i = 0; i < owner.getNumGlobalParameters(); i++) { string name = owner.getGlobalParameterName(i); defaultParameters[name] = owner.getGlobalParameterDefaultValue(i); globalParameterNames[i] = name; variableLocations[name] = &globalValues[i]; } variableLocations["v"] = &volume; variableLocations["ax"] = &a[0]; variableLocations["bx"] = &b[0]; variableLocations["by"] = &b[1]; variableLocations["cx"] = &c[0]; variableLocations["cy"] = &c[1]; variableLocations["cz"] = &c[2]; energyExpression.setVariableLocations(variableLocations); } void CustomVolumeForceImpl::initialize(ContextImpl& context) { CustomCPPForceImpl::initialize(context); } double CustomVolumeForceImpl::computeForce(ContextImpl& context, const vector& positions, vector& forces) { for (int i = 0; i < globalParameterNames.size(); i++) globalValues[i] = context.getParameter(globalParameterNames[i]); context.getPeriodicBoxVectors(a, b, c); volume = a[0]*b[1]*c[2]; return energyExpression.evaluate(); } map CustomVolumeForceImpl::getDefaultParameters() { return defaultParameters; }