/* -------------------------------------------------------------------------- * * OpenMMAmoeba * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2009 Stanford University and the Authors. * * Authors: * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Force.h" #include "openmm/OpenMMException.h" #include "openmm/AmoebaStretchBendForce.h" #include "openmm/internal/AmoebaStretchBendForceImpl.h" using namespace OpenMM; AmoebaStretchBendForce::AmoebaStretchBendForce() { } int AmoebaStretchBendForce::addStretchBend(int particle1, int particle2, int particle3, double lengthAB, double lengthCB, double angle, double k) { stretchBends.push_back(StretchBendInfo(particle1, particle2, particle3, lengthAB, lengthCB, angle, k)); return stretchBends.size()-1; } void AmoebaStretchBendForce::getStretchBendParameters(int index, int& particle1, int& particle2, int& particle3, double& lengthAB, double& lengthCB, double& angle, double& k ) const { particle1 = stretchBends[index].particle1; particle2 = stretchBends[index].particle2; particle3 = stretchBends[index].particle3; lengthAB = stretchBends[index].lengthAB; lengthCB = stretchBends[index].lengthCB; angle = stretchBends[index].angle; k = stretchBends[index].k; } void AmoebaStretchBendForce::setStretchBendParameters(int index, int particle1, int particle2, int particle3, double lengthAB, double lengthCB, double angle, double k) { stretchBends[index].particle1 = particle1; stretchBends[index].particle2 = particle2; stretchBends[index].particle3 = particle3; stretchBends[index].lengthAB = lengthAB; stretchBends[index].lengthCB = lengthCB; stretchBends[index].angle = angle; stretchBends[index].k = k; } ForceImpl* AmoebaStretchBendForce::createImpl() { return new AmoebaStretchBendForceImpl(*this); }