#ifndef OPENMM_OPENCLPARALLELKERNELS_H_
#define OPENMM_OPENCLPARALLELKERNELS_H_
/* -------------------------------------------------------------------------- *
* OpenMM *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* *
* Portions copyright (c) 2011 Stanford University and the Authors. *
* Authors: Peter Eastman *
* Contributors: *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU Lesser General Public License as published *
* by the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU Lesser General Public License for more details. *
* *
* You should have received a copy of the GNU Lesser General Public License *
* along with this program. If not, see . *
* -------------------------------------------------------------------------- */
#include "OpenCLPlatform.h"
#include "OpenCLContext.h"
#include "OpenCLKernels.h"
namespace OpenMM {
/**
* This kernel is invoked at the beginning and end of force and energy computations. It gives the
* Platform a chance to clear buffers and do other initialization at the beginning, and to do any
* necessary work at the end to determine the final results.
*/
class OpenCLParallelCalcForcesAndEnergyKernel : public CalcForcesAndEnergyKernel {
public:
OpenCLParallelCalcForcesAndEnergyKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data);
OpenCLCalcForcesAndEnergyKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
*/
void initialize(const System& system);
/**
* This is called at the beginning of each force/energy computation, before calcForcesAndEnergy() has been called on
* any ForceImpl.
*
* @param context the context in which to execute this kernel
* @param includeForce true if forces should be computed
* @param includeEnergy true if potential energy should be computed
*/
void beginComputation(ContextImpl& context, bool includeForce, bool includeEnergy);
/**
* This is called at the end of each force/energy computation, after calcForcesAndEnergy() has been called on
* every ForceImpl.
*
* @param context the context in which to execute this kernel
* @param includeForce true if forces should be computed
* @param includeEnergy true if potential energy should be computed
* @return the potential energy of the system. This value is added to all values returned by ForceImpls'
* calcForcesAndEnergy() methods. That is, each force kernel may either return its contribution to the
* energy directly, or add it to an internal buffer so that it will be included here.
*/
double finishComputation(ContextImpl& context, bool includeForce, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by HarmonicBondForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcHarmonicBondForceKernel : public CalcHarmonicBondForceKernel {
public:
OpenCLParallelCalcHarmonicBondForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcHarmonicBondForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the HarmonicBondForce this kernel will be used for
*/
void initialize(const System& system, const HarmonicBondForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by CustomBondForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcCustomBondForceKernel : public CalcCustomBondForceKernel {
public:
OpenCLParallelCalcCustomBondForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcCustomBondForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the CustomBondForce this kernel will be used for
*/
void initialize(const System& system, const CustomBondForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by HarmonicAngleForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcHarmonicAngleForceKernel : public CalcHarmonicAngleForceKernel {
public:
OpenCLParallelCalcHarmonicAngleForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcHarmonicAngleForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the HarmonicAngleForce this kernel will be used for
*/
void initialize(const System& system, const HarmonicAngleForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by CustomAngleForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcCustomAngleForceKernel : public CalcCustomAngleForceKernel {
public:
OpenCLParallelCalcCustomAngleForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcCustomAngleForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the CustomAngleForce this kernel will be used for
*/
void initialize(const System& system, const CustomAngleForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by PeriodicTorsionForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcPeriodicTorsionForceKernel : public CalcPeriodicTorsionForceKernel {
public:
OpenCLParallelCalcPeriodicTorsionForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcPeriodicTorsionForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the PeriodicTorsionForce this kernel will be used for
*/
void initialize(const System& system, const PeriodicTorsionForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by RBTorsionForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcRBTorsionForceKernel : public CalcRBTorsionForceKernel {
public:
OpenCLParallelCalcRBTorsionForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcRBTorsionForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the RBTorsionForce this kernel will be used for
*/
void initialize(const System& system, const RBTorsionForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by CMAPTorsionForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcCMAPTorsionForceKernel : public CalcCMAPTorsionForceKernel {
public:
OpenCLParallelCalcCMAPTorsionForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcCMAPTorsionForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the CMAPTorsionForce this kernel will be used for
*/
void initialize(const System& system, const CMAPTorsionForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by CustomTorsionForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcCustomTorsionForceKernel : public CalcCustomTorsionForceKernel {
public:
OpenCLParallelCalcCustomTorsionForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcCustomTorsionForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the CustomTorsionForce this kernel will be used for
*/
void initialize(const System& system, const CustomTorsionForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by NonbondedForce to calculate the forces acting on the system.
*/
class OpenCLParallelCalcNonbondedForceKernel : public CalcNonbondedForceKernel {
public:
OpenCLParallelCalcNonbondedForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcNonbondedForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the NonbondedForce this kernel will be used for
*/
void initialize(const System& system, const NonbondedForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by CustomExternalForce to calculate the forces acting on the system and the energy of the system.
*/
class OpenCLParallelCalcCustomExternalForceKernel : public CalcCustomExternalForceKernel {
public:
OpenCLParallelCalcCustomExternalForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcCustomExternalForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the CustomExternalForce this kernel will be used for
*/
void initialize(const System& system, const CustomExternalForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
/**
* This kernel is invoked by CustomHbondForce to calculate the forces acting on the system.
*/
class OpenCLParallelCalcCustomHbondForceKernel : public CalcCustomHbondForceKernel {
public:
OpenCLParallelCalcCustomHbondForceKernel(std::string name, const Platform& platform, OpenCLPlatform::PlatformData& data, System& system);
OpenCLCalcCustomHbondForceKernel& getKernel(int index) {
return dynamic_cast(kernels[index].getImpl());
}
/**
* Initialize the kernel.
*
* @param system the System this kernel will be applied to
* @param force the CustomHbondForce this kernel will be used for
*/
void initialize(const System& system, const CustomHbondForce& force);
/**
* Execute the kernel to calculate the forces and/or energy.
*
* @param context the context in which to execute this kernel
* @param includeForces true if forces should be calculated
* @param includeEnergy true if the energy should be calculated
* @return the potential energy due to the force
*/
double execute(ContextImpl& context, bool includeForces, bool includeEnergy);
private:
OpenCLPlatform::PlatformData& data;
std::vector kernels;
};
} // namespace OpenMM
#endif /*OPENMM_OPENCLPARALLELKERNELS_H_*/