#ifndef OPENMM_PERIODICTORSIONFORCE_H_ #define OPENMM_PERIODICTORSIONFORCE_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "Force.h" #include "Vec3.h" #include #include #include "internal/windowsExport.h" namespace OpenMM { /** * This class implements an interaction between groups of four atoms that varies periodically with the torsion angle * between them. When creating a PeriodicTorsionForce, you specify the number of torsions as an argument to the * constructor, then loop over them and call setTorsionParameters() to set the force field parameters for each one. */ class OPENMM_EXPORT PeriodicTorsionForce : public Force { public: /** * Create a PeriodicTorsionForce. * * @param numTorsions the number of periodic torsion terms in the potential function */ PeriodicTorsionForce(int numTorsions); /** * Get the number of periodic torsion terms in the potential function */ int getNumTorsions() const { return periodicTorsions.size(); } /** * Get the force field parameters for a periodic torsion term. * * @param index the index of the torsion for which to get parameters * @param atom1 the index of the first atom forming the torsion * @param atom2 the index of the second atom forming the torsion * @param atom3 the index of the third atom forming the torsion * @param atom3 the index of the fourth atom forming the torsion * @param periodicity the periodicity of the torsion * @param phase the phase offset of the torsion, measured in radians * @param k the force constant for the torsion */ void getTorsionParameters(int index, int& atom1, int& atom2, int& atom3, int& atom4, int& periodicity, double& phase, double& k) const; /** * Set the force field parameters for a periodic torsion term. * * @param index the index of the torsion for which to set parameters * @param atom1 the index of the first atom forming the torsion * @param atom2 the index of the second atom forming the torsion * @param atom3 the index of the third atom forming the torsion * @param atom3 the index of the fourth atom forming the torsion * @param periodicity the periodicity of the torsion * @param phase the phase offset of the torsion, measured in radians * @param k the force constant for the torsion */ void setTorsionParameters(int index, int atom1, int atom2, int atom3, int atom4, int periodicity, double phase, double k); /** * Get the force field parameters for a Ryckaert-Bellemans torsion term. * * @param index the index of the torsion for which to get parameters * @param atom1 the index of the first atom forming the torsion * @param atom2 the index of the second atom forming the torsion * @param atom3 the index of the third atom forming the torsion * @param atom3 the index of the fourth atom forming the torsion * @param c0 the coefficient of the constant term * @param c1 the coefficient of the 1st order term * @param c2 the coefficient of the 2nd order term * @param c3 the coefficient of the 3rd order term * @param c4 the coefficient of the 4th order term * @param c5 the coefficient of the 5th order term */ protected: ForceImpl* createImpl(); private: class PeriodicTorsionInfo; // Retarded visual studio compiler complains about being unable to // export private stl class members. // This stanza explains that it should temporarily shut up. #if defined(_MSC_VER) #pragma warning(push) #pragma warning(disable:4251) #endif std::vector periodicTorsions; #if defined(_MSC_VER) #pragma warning(pop) #endif }; class PeriodicTorsionForce::PeriodicTorsionInfo { public: int atom1, atom2, atom3, atom4, periodicity; double phase, k; PeriodicTorsionInfo() { atom1 = atom2 = atom3 = atom4 = -1; periodicity = 1; phase = k = 0.0; } }; } // namespace OpenMM #endif /*OPENMM_PERIODICTORSIONFORCE_H_*/