# Doxyfile 1.5.3

#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
DOXYFILE_ENCODING      = UTF-8
PROJECT_NAME           = @PROJECT_NAME@
PROJECT_NUMBER         =
OUTPUT_DIRECTORY       =
CREATE_SUBDIRS         = NO
OUTPUT_LANGUAGE        = English
BRIEF_MEMBER_DESC      = YES
REPEAT_BRIEF           = YES
ABBREVIATE_BRIEF       =
ALWAYS_DETAILED_SEC    = NO
INLINE_INHERITED_MEMB  = NO
FULL_PATH_NAMES        = NO
STRIP_FROM_PATH        =
STRIP_FROM_INC_PATH    =
SHORT_NAMES            = NO
JAVADOC_AUTOBRIEF      = YES
QT_AUTOBRIEF           = NO
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP         = YES
INHERIT_DOCS           = YES
SEPARATE_MEMBER_PAGES  = NO
TAB_SIZE               = 4
ALIASES                =
OPTIMIZE_OUTPUT_FOR_C  = NO
OPTIMIZE_OUTPUT_JAVA   = NO
BUILTIN_STL_SUPPORT    = NO
CPP_CLI_SUPPORT        = NO
DISTRIBUTE_GROUP_DOC   = YES
SUBGROUPING            = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL            = YES
EXTRACT_PRIVATE        = NO
EXTRACT_STATIC         = NO
EXTRACT_LOCAL_CLASSES  = YES
EXTRACT_LOCAL_METHODS  = NO
EXTRACT_ANON_NSPACES   = NO
HIDE_UNDOC_MEMBERS     = NO
HIDE_UNDOC_CLASSES     = NO
HIDE_FRIEND_COMPOUNDS  = NO
HIDE_IN_BODY_DOCS      = YES
INTERNAL_DOCS          = NO
CASE_SENSE_NAMES       = YES
HIDE_SCOPE_NAMES       = YES
SHOW_INCLUDE_FILES     = YES
INLINE_INFO            = YES
SORT_MEMBER_DOCS       = YES
SORT_BRIEF_DOCS        = NO
SORT_BY_SCOPE_NAME     = NO
GENERATE_TODOLIST      = YES
GENERATE_TESTLIST      = YES
GENERATE_BUGLIST       = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS       =
MAX_INITIALIZER_LINES  = 30
SHOW_USED_FILES        = YES
SHOW_DIRECTORIES       = YES
FILE_VERSION_FILTER    =
SHOW_NAMESPACES        = NO
SHOW_FILES             = NO
SHOW_DIRECTORIES       = NO
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET                  = YES
WARNINGS               = YES
WARN_IF_UNDOCUMENTED   = YES
WARN_IF_DOC_ERROR      = YES
WARN_NO_PARAMDOC       = NO
WARN_FORMAT            = "$file:$line: $text    "
WARN_LOGFILE           =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT                  = "@CMAKE_SOURCE_DIR@/openmmapi" \
                         "@CMAKE_SOURCE_DIR@/olla" \
                         "@CMAKE_SOURCE_DIR@/serialization/include/openmm/serialization/XmlSerializer.h" \
                         "@CMAKE_SOURCE_DIR@/plugins/drude/openmmapi/include" \
                         "@CMAKE_SOURCE_DIR@/plugins/rpmd/openmmapi/include" \
                         "@CMAKE_SOURCE_DIR@/plugins/amoeba/openmmapi/include"
INPUT_ENCODING         = UTF-8
FILE_PATTERNS          =
RECURSIVE              = YES
EXCLUDE                =
EXCLUDE_SYMLINKS       = NO
EXCLUDE_PATTERNS       = */tests/* \
                         */openmmapi/src/* \
                         */.svn/* \
                         */internal/* \
                         */olla/include/openmm/kernels.h \
                         */DrudeKernels.h \
                         */RpmdKernels.h \
                         */amoebaKernels.h \
EXCLUDE_SYMBOLS        =
EXAMPLE_PATH           =
EXAMPLE_PATTERNS       =
EXAMPLE_RECURSIVE      = NO
IMAGE_PATH             =
INPUT_FILTER           =
FILTER_PATTERNS        =
FILTER_SOURCE_FILES    = NO

SOURCE_BROWSER         = NO
ALPHABETICAL_INDEX     = NO
GENERATE_HTML          = NO
GENERATE_LATEX         = NO
GENERATE_RTF           = NO
GENERATE_MAN           = NO

#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML           = YES
XML_OUTPUT             = xml
XML_SCHEMA             =
XML_DTD                =
XML_PROGRAMLISTING     = YES
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING   = YES
MACRO_EXPANSION        = YES
EXPAND_ONLY_PREDEF     = YES
SEARCH_INCLUDES        = YES
INCLUDE_PATH           =
INCLUDE_FILE_PATTERNS  =
PREDEFINED             =
EXPAND_AS_DEFINED      =
SKIP_FUNCTION_MACROS   = YES