/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "LangevinIntegrator.h" #include "OpenMMContext.h" #include "internal/OpenMMContextImpl.h" #include "kernels.h" #include using namespace OpenMM; using std::string; using std::vector; LangevinIntegrator::LangevinIntegrator(double temperature, double frictionCoeff, double stepSize) { setTemperature(temperature); setFriction(frictionCoeff); setStepSize(stepSize); } void LangevinIntegrator::initialize(OpenMMContextImpl& contextRef) { context = &contextRef; kernel = context->getPlatform().createKernel(IntegrateLangevinStepKernel::Name(), contextRef); dynamic_cast(kernel.getImpl()).initialize(contextRef.getSystem(), *this); } vector LangevinIntegrator::getKernelNames() { std::vector names; names.push_back(IntegrateLangevinStepKernel::Name()); return names; } void LangevinIntegrator::step(int steps) { for (int i = 0; i < steps; ++i) { context->updateContextState(); context->calcForces(); dynamic_cast(kernel.getImpl()).execute(*context, *this); context->setTime(context->getTime()+getStepSize()); } }