#ifndef OPENMM_BROOK_CALC_HARMONIC_ANGLE_FORCE_KERNEL_H_ #define OPENMM_BROOK_CALC_HARMONIC_ANGLE_FORCE_KERNEL_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009 Stanford University and the Authors. * * Authors: Mark Friedrichs, Mike Houston * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ #include "openmm/kernels.h" #include "BrookPlatform.h" #include "BrookBondParameters.h" #include "OpenMMBrookInterface.h" namespace OpenMM { /** * This kernel is invoked to calculate the harmonic angle forces acting on the system. */ class BrookCalcHarmonicAngleForceKernel : public CalcHarmonicAngleForceKernel { public: /** * BrookCalcHarmonicAngleForceKernel constructor */ BrookCalcHarmonicAngleForceKernel( std::string name, const Platform& platform, OpenMMBrookInterface& openMMBrookInterface, System& system ); /** * BrookCalcHarmonicAngleForceKernel destructor */ ~BrookCalcHarmonicAngleForceKernel(); /** * Initialize the kernel, setting up the values to calculate harmonic bond force & energy * * @param system System reference * @param force HarmonicAngleForce reference * */ void initialize( const System& system, const HarmonicAngleForce& force ); /** * Execute the kernel to calculate the forces. * * @param positions particle coordiantes * @param forces output forces * */ void executeForces( OpenMMContextImpl& context ); /** * Execute the kernel to calculate the energy. * * @param context the context in which to execute this kernel * * @return potential energy associated with the harmonic angle force * */ double executeEnergy( OpenMMContextImpl& context ); /** * Set log file reference * * @param log file reference * * @return DefaultReturnValue * */ int setLog( FILE* log ); /* * Get contents of object * * @param level of dump * * @return string containing contents * * */ std::string getContents( int level ) const; /** * Get log file reference * * @return log file reference * */ FILE* getLog( void ) const; /** * Get number of bonds * * @return number of bonds * */ int getNumberOfBonds( void ) const; /** * Get indices/parameters * * @return BrookBondParameters containing particle indices/parameters * */ BrookBondParameters* getBrookBondParameters( void ) const; private: static const int NumberOfParticlesInBond = 3; static const int NumberOfParametersInBond = 2; // bond name static const std::string BondName; // log file reference FILE* _log; // Brook bond parameters BrookBondParameters* _brookBondParameters; // interface OpenMMBrookInterface& _openMMBrookInterface; // System reference System& _system; }; } // namespace OpenMM #endif /* OPENMM_BROOK_CALC_HARMONIC_ANGLE_FORCE_KERNEL_H_ */