/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2010 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ /** * This tests the OpenCL implementation of CustomTorsionForce. */ #ifdef WIN32 #define _USE_MATH_DEFINES // Needed to get M_PI #endif #include "openmm/internal/AssertionUtilities.h" #include "openmm/Context.h" #include "OpenCLPlatform.h" #include "openmm/CustomTorsionForce.h" #include "openmm/PeriodicTorsionForce.h" #include "openmm/System.h" #include "openmm/VerletIntegrator.h" #include "sfmt/SFMT.h" #include #include using namespace OpenMM; using namespace std; OpenCLPlatform platform; const double TOL = 1e-5; void testTorsions() { // Create a system using a CustomTorsionForce. System customSystem; customSystem.addParticle(1.0); customSystem.addParticle(1.0); customSystem.addParticle(1.0); customSystem.addParticle(1.0); customSystem.addParticle(1.0); CustomTorsionForce* custom = new CustomTorsionForce("k*(1+cos(n*theta-theta0))"); custom->addPerTorsionParameter("theta0"); custom->addPerTorsionParameter("n"); custom->addGlobalParameter("k", 0.5); vector parameters(2); parameters[0] = 1.5; parameters[1] = 1; custom->addTorsion(0, 1, 2, 3, parameters); parameters[0] = 2.0; parameters[1] = 2; custom->addTorsion(1, 2, 3, 4, parameters); customSystem.addForce(custom); // Create an identical system using a PeriodicTorsionForce. System harmonicSystem; harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); harmonicSystem.addParticle(1.0); VerletIntegrator integrator(0.01); PeriodicTorsionForce* periodic = new PeriodicTorsionForce(); periodic->addTorsion(0, 1, 2, 3, 1, 1.5, 0.5); periodic->addTorsion(1, 2, 3, 4, 2, 2.0, 0.5); harmonicSystem.addForce(periodic); // Set the atoms in various positions, and verify that both systems give identical forces and energy. OpenMM_SFMT::SFMT sfmt; init_gen_rand(0, sfmt); vector positions(5); VerletIntegrator integrator1(0.01); VerletIntegrator integrator2(0.01); Context c1(customSystem, integrator1, platform); Context c2(harmonicSystem, integrator2, platform); for (int i = 0; i < 10; i++) { for (int j = 0; j < (int) positions.size(); j++) positions[j] = Vec3(5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt)); c1.setPositions(positions); c2.setPositions(positions); State s1 = c1.getState(State::Forces | State::Energy); State s2 = c2.getState(State::Forces | State::Energy); for (int i = 0; i < customSystem.getNumParticles(); i++) ASSERT_EQUAL_VEC(s1.getForces()[i], s2.getForces()[i], TOL); ASSERT_EQUAL_TOL(s1.getPotentialEnergy(), s2.getPotentialEnergy(), TOL); } // Try changing the torsion parameters and make sure it's still correct. parameters[0] = 1.6; parameters[1] = 2; custom->setTorsionParameters(0, 0, 1, 2, 3, parameters); parameters[0] = 2.1; parameters[1] = 3; custom->setTorsionParameters(1, 1, 2, 3, 4, parameters); custom->updateParametersInContext(c1); periodic->setTorsionParameters(0, 0, 1, 2, 3, 2, 1.6, 0.5); periodic->setTorsionParameters(1, 1, 2, 3, 4, 3, 2.1, 0.5); periodic->updateParametersInContext(c2); { for (int j = 0; j < (int) positions.size(); j++) positions[j] = Vec3(5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt)); c1.setPositions(positions); c2.setPositions(positions); State s1 = c1.getState(State::Forces | State::Energy); State s2 = c2.getState(State::Forces | State::Energy); const vector& forces = s1.getForces(); for (int i = 0; i < customSystem.getNumParticles(); i++) ASSERT_EQUAL_VEC(s1.getForces()[i], s2.getForces()[i], TOL); ASSERT_EQUAL_TOL(s1.getPotentialEnergy(), s2.getPotentialEnergy(), TOL); } } void testRange() { System system; system.addParticle(1.0); system.addParticle(1.0); system.addParticle(1.0); system.addParticle(1.0); CustomTorsionForce* custom = new CustomTorsionForce("theta"); custom->addTorsion(0, 1, 2, 3, vector()); system.addForce(custom); // Set the atoms in various positions, and verify that the angle is always in the expected range. OpenMM_SFMT::SFMT sfmt; init_gen_rand(0, sfmt); vector positions(4); VerletIntegrator integrator(0.01); double minAngle = 1000; double maxAngle = -1000; Context context(system, integrator, platform); for (int i = 0; i < 100; i++) { for (int j = 0; j < (int) positions.size(); j++) positions[j] = Vec3(5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt), 5.0*genrand_real2(sfmt)); context.setPositions(positions); double angle = context.getState(State::Energy).getPotentialEnergy(); if (angle < minAngle) minAngle = angle; if (angle > maxAngle) maxAngle = angle; } ASSERT(minAngle >= -M_PI); ASSERT(maxAngle <= M_PI); } void testParallelComputation() { System system; const int numParticles = 200; for (int i = 0; i < numParticles; i++) system.addParticle(1.0); CustomTorsionForce* force = new CustomTorsionForce("sin(theta-1.1)"); vector params; for (int i = 3; i < numParticles; i++) force->addTorsion(i-3, i-2, i-1, i, params); system.addForce(force); vector positions(numParticles); for (int i = 0; i < numParticles; i++) positions[i] = Vec3(i, i%2, i%3); VerletIntegrator integrator1(0.01); Context context1(system, integrator1, platform); context1.setPositions(positions); State state1 = context1.getState(State::Forces | State::Energy); VerletIntegrator integrator2(0.01); string deviceIndex = platform.getPropertyValue(context1, OpenCLPlatform::OpenCLDeviceIndex()); map props; props[OpenCLPlatform::OpenCLDeviceIndex()] = deviceIndex+","+deviceIndex; Context context2(system, integrator2, platform, props); context2.setPositions(positions); State state2 = context2.getState(State::Forces | State::Energy); ASSERT_EQUAL_TOL(state1.getPotentialEnergy(), state2.getPotentialEnergy(), 1e-5); for (int i = 0; i < numParticles; i++) ASSERT_EQUAL_VEC(state1.getForces()[i], state2.getForces()[i], 1e-5); } int main(int argc, char* argv[]) { try { if (argc > 1) platform.setPropertyDefaultValue("OpenCLPrecision", string(argv[1])); testTorsions(); testRange(); testParallelComputation(); } catch(const exception& e) { cout << "exception: " << e.what() << endl; return 1; } cout << "Done" << endl; return 0; }