/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009 Stanford University and the Authors. * * Authors: Peter Eastman, Mark Friedrichs * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ /** * This tests the Brook periodic torsion bond force/energy */ #include "../../../tests/AssertionUtilities.h" #include "BrookPlatform.h" #include "openmm/Context.h" #include "openmm/PeriodicTorsionForce.h" #include "openmm/System.h" #include "openmm/LangevinIntegrator.h" #include #define PI_M 3.141592653589 using namespace OpenMM; using namespace std; const double TOL = 1e-5; void testBrookPeriodicTorsions( FILE* log ){ // --------------------------------------------------------------------------------------- static const std::string methodName = "PeriodicTorsions"; int PrintOn = 0; int numberOfParticles = 4; double mass = 2.0; // --------------------------------------------------------------------------------------- PrintOn = log ? PrintOn : 0; if( PrintOn ){ (void) fprintf( log, "%s\n", methodName.c_str() ); (void) fflush( log ); } BrookPlatform platform( 32, "cal", log ); System system; system.addParticle(1.0); system.addParticle(1.0); system.addParticle(1.0); system.addParticle(1.0); LangevinIntegrator integrator( 0, 0.1, 0.01 ); // int numParticles, int numBonds, int numAngles, int numPeriodicTorsions, int numRBTorsions PeriodicTorsionForce* forceField = new PeriodicTorsionForce(); // int index, int atom1, int atom2, int atom3, double angle, double k forceField->addTorsion(0, 1, 2, 3, 2, PI_M/3, 1.1); system.addForce(forceField); Context context(system, integrator, platform); vector positions(numberOfParticles); positions[0] = Vec3(0, 1, 0); positions[1] = Vec3(0, 0, 0); positions[2] = Vec3(1, 0, 0); positions[3] = Vec3(1, 0, 2); context.setPositions(positions); State state = context.getState( State::Forces | State::Energy ); const vector& forces = state.getForces(); if( PrintOn ){ (void) fprintf( log, "Periodic torsion bond forces\n"); for( int ii = 0; ii < numberOfParticles; ii++ ){ (void) fprintf( log, "%d [%.5e %.5e %.5e]\n", ii, forces[ii][0], forces[ii][1], forces[ii][2] ); } (void) fflush( log ); } double torque = -2*1.1*std::sin(2*PI_M/3); double tolerance = 1.0e-03; ASSERT_EQUAL_VEC(Vec3(0, 0, torque), forces[0], tolerance ); ASSERT_EQUAL_VEC(Vec3(0, 0.5*torque, 0), forces[3], tolerance ); ASSERT_EQUAL_VEC(Vec3(forces[0][0]+forces[1][0]+forces[2][0]+forces[3][0], forces[0][1]+forces[1][1]+forces[2][1]+forces[3][1], forces[0][2]+forces[1][2]+forces[2][2]+forces[3][2]), Vec3(0, 0, 0), tolerance ); ASSERT_EQUAL_TOL(1.1*(1+std::cos(2*PI_M/3)), state.getPotentialEnergy(), tolerance ); if( PrintOn ){ (void) fprintf( log, "Periodic torsion bond forces ok -- tolerance=%.2e\n", tolerance); (void) fflush( log ); } } int main( ){ // --------------------------------------------------------------------------------------- static const std::string methodName = "testBrookPeriodicTorsions"; FILE* log = stdout; // --------------------------------------------------------------------------------------- (void) fflush( stdout ); (void) fflush( stderr ); try { testBrookPeriodicTorsions( log ); } catch( const exception& e ){ (void) fprintf( log, "Exception %s %.s\n", methodName.c_str(), e.what() ); (void) fflush( log ); return 1; } (void) fprintf( log, "\n%s done\n", methodName.c_str() ); (void) fflush( log ); return 0; }