/* -------------------------------------------------------------------------- *
* OpenMM *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* *
* Portions copyright (c) 2009 Stanford University and the Authors. *
* Authors: Peter Eastman, Mark Friedrichs *
* Contributors: *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU Lesser General Public License as published *
* by the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU Lesser General Public License for more details. *
* *
* You should have received a copy of the GNU Lesser General Public License *
* along with this program. If not, see . *
* -------------------------------------------------------------------------- */
/**
* This tests the Brook RB torsion bond force/energy
*/
#include "../../../tests/AssertionUtilities.h"
#include "BrookPlatform.h"
#include "ReferencePlatform.h"
#include "openmm/OpenMMContext.h"
#include "openmm/RBTorsionForce.h"
#include "openmm/System.h"
#include "openmm/LangevinIntegrator.h"
#include
#define PI_M 3.141592653589
using namespace OpenMM;
using namespace std;
const double TOL = 1e-5;
void testBrookRBTorsions( FILE* log ){
// ---------------------------------------------------------------------------------------
static const std::string methodName = "RBTorsions";
int PrintOn = 0;
int numberOfParticles = 4;
double mass = 2.0;
// ---------------------------------------------------------------------------------------
PrintOn = log ? PrintOn : 0;
if( PrintOn ){
(void) fprintf( log, "%s\n", methodName.c_str() ); (void) fflush( log );
}
BrookPlatform platform( 32, "cal", log );
//ReferencePlatform platform;
System system;
system.addParticle(1.0);
system.addParticle(1.0);
system.addParticle(1.0);
system.addParticle(1.0);
LangevinIntegrator integrator( 0, 0.1, 0.01 );
RBTorsionForce* forceField = new RBTorsionForce();
forceField->addTorsion(0, 1, 2, 3, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6);
system.addForce(forceField);
OpenMMContext context(system, integrator, platform);
vector positions(numberOfParticles);
positions[0] = Vec3(0, 1, 0);
positions[1] = Vec3(0, 0, 0);
positions[2] = Vec3(1, 0, 0);
positions[3] = Vec3(1, 1, 1);
context.setPositions(positions);
State state = context.getState( State::Forces | State::Energy );
const vector& forces = state.getForces();
if( PrintOn ){
(void) fprintf( log, "RB torsion bond forces\n");
for( int ii = 0; ii < numberOfParticles; ii++ ){
(void) fprintf( log, "%d [%.5e %.5e %.5e]\n", ii, forces[ii][0], forces[ii][1], forces[ii][2] );
}
(void) fflush( log );
}
double psi = 0.25*PI_M - PI_M;
double torque = 0.0;
for (int i = 1; i < 6; ++i) {
double c = 0.1*(i+1);
torque += -c*i*std::pow(std::cos(psi), i-1)*std::sin(psi);
}
if( PrintOn ){
(void) fprintf( log, "RB torsion bond expected forces\n");
(void) fprintf( log, "0 [0.0 0.0 %.5e]\n", torque );
(void) fprintf( log, "3 [0.0 %.5e %.5e]\n", 0.5*torque, -0.5*torque );
(void) fflush( log );
}
double tolerance = 0.001;
ASSERT_EQUAL_VEC(Vec3(0, 0, torque), forces[0], tolerance );
ASSERT_EQUAL_VEC(Vec3(0, 0.5*torque, -0.5*torque), forces[3], tolerance );
ASSERT_EQUAL_VEC(Vec3(forces[0][0]+forces[1][0]+forces[2][0]+forces[3][0],
forces[0][1]+forces[1][1]+forces[2][1]+forces[3][1],
forces[0][2]+forces[1][2]+forces[2][2]+forces[3][2]),
Vec3(0, 0, 0), tolerance);
double energy = 0.0;
for (int i = 0; i < 6; ++i) {
double c = 0.1*(i+1);
energy += c*std::pow(std::cos(psi), i);
}
ASSERT_EQUAL_TOL(energy, state.getPotentialEnergy(), tolerance );
if( PrintOn ){
(void) fprintf( log, "RB torsion bond forces ok tolerance=%.2e\n", tolerance); fflush( log );
}
}
int main( ){
// ---------------------------------------------------------------------------------------
static const std::string methodName = "testBrookRbTorsion";
FILE* log = stdout;
// ---------------------------------------------------------------------------------------
(void) fflush( stdout );
(void) fflush( stderr );
try {
testBrookRBTorsions( log );
} catch( const exception& e ){
(void) fprintf( log, "Exception %s %.s\n", methodName.c_str(), e.what() ); (void) fflush( log );
return 1;
}
(void) fprintf( log, "\n%s done\n", methodName.c_str() ); (void) fflush( log );
return 0;
}