/* -------------------------------------------------------------------------- * * AmoebaOpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2009 Stanford University and the Authors. * * Authors: * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Force.h" #include "openmm/OpenMMException.h" #include "AmoebaHarmonicBondForce.h" #include "internal/AmoebaHarmonicBondForceImpl.h" using namespace OpenMM; const double AmoebaHarmonicBondForce::DEFAULT_GLOBAL_K = -1234.567891234; AmoebaHarmonicBondForce::AmoebaHarmonicBondForce() { _globalCubicK = _globalQuarticK = 0.0; } int AmoebaHarmonicBondForce::addBond(int particle1, int particle2, double length, double quadraticK, double cubicK, double quarticK) { bonds.push_back(BondInfo(particle1, particle2, length, quadraticK, cubicK, quarticK)); return bonds.size()-1; } void AmoebaHarmonicBondForce::getBondParameters(int index, int& particle1, int& particle2, double& length, double& quadraticK, double& cubicK, double& quarticK ) const { particle1 = bonds[index].particle1; particle2 = bonds[index].particle2; length = bonds[index].length; quadraticK = bonds[index].quadraticK; cubicK = bonds[index].cubicK == DEFAULT_GLOBAL_K ? _globalCubicK : bonds[index].cubicK; quarticK = bonds[index].quarticK == DEFAULT_GLOBAL_K ? _globalQuarticK : bonds[index].quarticK; } void AmoebaHarmonicBondForce::setBondParameters(int index, int particle1, int particle2, double length, double quadraticK, double cubicK, double quarticK ) { bonds[index].particle1 = particle1; bonds[index].particle2 = particle2; bonds[index].length = length; bonds[index].quadraticK = quadraticK; bonds[index].cubicK = cubicK; bonds[index].quarticK = quarticK; } void AmoebaHarmonicBondForce::setAmoebaGlobalHarmonicBondCubic(double cubicK ) { _globalCubicK = cubicK; } void AmoebaHarmonicBondForce::setAmoebaGlobalHarmonicBondQuartic(double quarticK ) { _globalQuarticK = quarticK; } double AmoebaHarmonicBondForce::getAmoebaGlobalHarmonicBondCubic( void ) const { return _globalCubicK; } double AmoebaHarmonicBondForce::getAmoebaGlobalHarmonicBondQuartic( void ) const { return _globalQuarticK; } ForceImpl* AmoebaHarmonicBondForce::createImpl() { return new AmoebaHarmonicBondForceImpl(*this); }