/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2010 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/internal/AssertionUtilities.h" #include "openmm/GBVIForce.h" #include "openmm/serialization/XmlSerializer.h" #include #include using namespace OpenMM; using namespace std; void testSerialization() { // Create a Force. GBVIForce force; force.setNonbondedMethod(GBVIForce::CutoffPeriodic); force.setBornRadiusScalingMethod(GBVIForce::QuinticSpline); force.setQuinticLowerLimitFactor(0.123); force.setQuinticUpperBornRadiusLimit(5.123); force.setCutoffDistance(2.0); force.setSoluteDielectric(5.1); force.setSolventDielectric(50.0); force.addParticle(1, 0.1, 0.01); force.addParticle(0.5, 0.2, 0.02); force.addParticle(-0.5, 0.3, 0.03); force.addBond(0, 1, 2.0); force.addBond(3, 5, 1.2); // Serialize and then deserialize it. stringstream buffer; XmlSerializer::serialize(&force, "Force", buffer); GBVIForce* copy = XmlSerializer::deserialize(buffer); // Compare the two forces to see if they are identical. GBVIForce& force2 = *copy; ASSERT_EQUAL(force.getNonbondedMethod(), force2.getNonbondedMethod()); ASSERT_EQUAL(force.getCutoffDistance(), force2.getCutoffDistance()); ASSERT_EQUAL(force.getSoluteDielectric(), force2.getSoluteDielectric()); ASSERT_EQUAL(force.getSolventDielectric(), force2.getSolventDielectric()); ASSERT_EQUAL(force.getNumParticles(), force2.getNumParticles()); ASSERT_EQUAL(force.getQuinticUpperBornRadiusLimit(), force2.getQuinticUpperBornRadiusLimit()); ASSERT_EQUAL(force.getQuinticLowerLimitFactor(), force2.getQuinticLowerLimitFactor()); ASSERT_EQUAL(force.getBornRadiusScalingMethod(), force2.getBornRadiusScalingMethod()); for (int i = 0; i < force.getNumParticles(); i++) { double charge1, radius1, scale1; double charge2, radius2, scale2; force.getParticleParameters(i, charge1, radius1, scale1); force2.getParticleParameters(i, charge2, radius2, scale2); ASSERT_EQUAL(charge1, charge2); ASSERT_EQUAL(radius1, radius2); ASSERT_EQUAL(scale1, scale2); } ASSERT_EQUAL(force.getNumBonds(), force2.getNumBonds()); for (int i = 0; i < force.getNumBonds(); i++) { int a1, a2, b1, b2; double da, db; force.getBondParameters(i, a1, a2, da); force2.getBondParameters(i, b1, b2, db); ASSERT_EQUAL(a1, b1); ASSERT_EQUAL(a2, b2); ASSERT_EQUAL(da, db); } } int main() { try { testSerialization(); } catch(const exception& e) { cout << "exception: " << e.what() << endl; return 1; } cout << "Done" << endl; return 0; }