/* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2010-2015 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Force.h" #include "openmm/OpenMMException.h" #include "openmm/CMAPTorsionForce.h" #include "openmm/internal/AssertionUtilities.h" #include "openmm/internal/CMAPTorsionForceImpl.h" using namespace OpenMM; CMAPTorsionForce::CMAPTorsionForce() { } int CMAPTorsionForce::addMap(int size, const std::vector& energy) { if (energy.size() != size*size) throw OpenMMException("CMAPTorsionForce: incorrect number of energy values"); maps.push_back(MapInfo(size, energy)); return maps.size()-1; } void CMAPTorsionForce::getMapParameters(int index, int& size, std::vector& energy) const { ASSERT_VALID_INDEX(index, maps); size = maps[index].size; energy = maps[index].energy; } void CMAPTorsionForce::setMapParameters(int index, int size, const std::vector& energy) { ASSERT_VALID_INDEX(index, maps); if (energy.size() != size*size) throw OpenMMException("CMAPTorsionForce: incorrect number of energy values"); maps[index].size = size; maps[index].energy = energy; } int CMAPTorsionForce::addTorsion(int map, int a1, int a2, int a3, int a4, int b1, int b2, int b3, int b4) { torsions.push_back(CMAPTorsionInfo(map, a1, a2, a3, a4, b1, b2, b3, b4)); return torsions.size()-1; } void CMAPTorsionForce::getTorsionParameters(int index, int& map, int& a1, int& a2, int& a3, int& a4, int& b1, int& b2, int& b3, int& b4) const { ASSERT_VALID_INDEX(index, torsions); map = torsions[index].map; a1 = torsions[index].a1; a2 = torsions[index].a2; a3 = torsions[index].a3; a4 = torsions[index].a4; b1 = torsions[index].b1; b2 = torsions[index].b2; b3 = torsions[index].b3; b4 = torsions[index].b4; } void CMAPTorsionForce::setTorsionParameters(int index, int map, int a1, int a2, int a3, int a4, int b1, int b2, int b3, int b4) { ASSERT_VALID_INDEX(index, torsions); torsions[index].map = map; torsions[index].a1 = a1; torsions[index].a2 = a2; torsions[index].a3 = a3; torsions[index].a4 = a4; torsions[index].b1 = b1; torsions[index].b2 = b2; torsions[index].b3 = b3; torsions[index].b4 = b4; } ForceImpl* CMAPTorsionForce::createImpl() const { return new CMAPTorsionForceImpl(*this); } void CMAPTorsionForce::updateParametersInContext(Context& context) { dynamic_cast(getImplInContext(context)).updateParametersInContext(getContextImpl(context)); }