#ifndef OPENMM_OPENCLINTEGRATIONUTILITIES_H_
#define OPENMM_OPENCLINTEGRATIONUTILITIES_H_
/* -------------------------------------------------------------------------- *
* OpenMM *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* *
* Portions copyright (c) 2009 Stanford University and the Authors. *
* Authors: Peter Eastman *
* Contributors: *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU Lesser General Public License as published *
* by the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU Lesser General Public License for more details. *
* *
* You should have received a copy of the GNU Lesser General Public License *
* along with this program. If not, see . *
* -------------------------------------------------------------------------- */
#include "openmm/System.h"
#include "OpenCLContext.h"
namespace OpenMM {
/**
* This class implements features that are used by many different integrators, including
* common workspace arrays, random number generation, and enforcing constraints.
*/
class OpenCLIntegrationUtilities {
public:
OpenCLIntegrationUtilities(OpenCLContext& context, const System& system);
~OpenCLIntegrationUtilities();
/**
* Get the array which contains position deltas.
*/
OpenCLArray& getPosDelta() {
return *posDelta;
}
/**
* Get the array which contains random values.
*/
OpenCLArray& getRandom() {
return *random;
}
/**
* Apply constraints to the atom positions.
*
* @param tol the constraint tolerance
*/
void applyConstraints(double tol);
/**
* Initialize the random number generator.
*/
void initRandomNumberGenerator(unsigned int randomNumberSeed);
/**
* Ensure that sufficient random numbers are available in the array, and generate new ones if not.
*
* @param numValues the number of random float4's that will be required
* @return the index in the array at which to start reading
*/
int prepareRandomNumbers(int numValues);
private:
OpenCLContext& context;
cl::Kernel settleKernel;
cl::Kernel shakeKernel;
cl::Kernel randomKernel;
OpenCLArray* posDelta;
OpenCLArray* settleAtoms;
OpenCLArray* settleParams;
OpenCLArray* shakeAtoms;
OpenCLArray* shakeParams;
OpenCLArray* random;
OpenCLArray* randomSeed;
int randomPos;
int lastSeed;
struct ShakeCluster;
};
} // namespace OpenMM
#endif /*OPENMM_OPENCLINTEGRATIONUTILITIES_H_*/