/* Portions copyright (c) 2006 Stanford University and Simbios. * Contributors: Pande Group * * Permission is hereby granted, free of charge, to any person obtaining * a copy of this software and associated documentation files (the * "Software"), to deal in the Software without restriction, including * without limitation the rights to use, copy, modify, merge, publish, * distribute, sublicense, and/or sell copies of the Software, and to * permit persons to whom the Software is furnished to do so, subject * to the following conditions: * * The above copyright notice and this permission notice shall be included * in all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS * OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. * IN NO EVENT SHALL THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE * LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION * OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION * WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ #ifndef __ReferenceLJCoulomb14_H__ #define __ReferenceLJCoulomb14_H__ #include "ReferenceBondIxn.h" // --------------------------------------------------------------------------------------- class ReferenceLJCoulomb14 : public ReferenceBondIxn { private: public: /**--------------------------------------------------------------------------------------- Constructor --------------------------------------------------------------------------------------- */ ReferenceLJCoulomb14( ); /**--------------------------------------------------------------------------------------- Destructor --------------------------------------------------------------------------------------- */ ~ReferenceLJCoulomb14( ); /**--------------------------------------------------------------------------------------- Calculate parameters for LJ 1-4 ixn @param c6 c6 @param c12 c12 @param q1 q1 charge atom 1 @param q2 q2 charge atom 2 @param epsfac epsfac ???????????? @param parameters output parameters: parameter[0]= c6*c6/c12 parameter[1]= (c12/c6)**1/6 parameter[2]= epsfactor*q1*q2 @return ReferenceForce::DefaultReturn --------------------------------------------------------------------------------------- */ int ReferenceLJCoulomb14::getDerivedParameters( RealOpenMM c6, RealOpenMM c12, RealOpenMM q1, RealOpenMM q2, RealOpenMM epsfac, RealOpenMM* parameters ) const; /**--------------------------------------------------------------------------------------- Calculate Ryckaert-Bellemans bond ixn @param atomIndices atom indices of 4 atoms in bond @param atomCoordinates atom coordinates @param parameters six RB parameters @param forces force array (forces added to current values) @param energiesByBond energies by bond: energiesByBond[bondIndex] @param energiesByAtom energies by atom: energiesByAtom[atomIndex] @return ReferenceForce::DefaultReturn --------------------------------------------------------------------------------------- */ int calculateBondIxn( int* atomIndices, RealOpenMM** atomCoordinates, RealOpenMM* parameters, RealOpenMM** forces, RealOpenMM* energiesByBond, RealOpenMM* energiesByAtom ) const; }; // --------------------------------------------------------------------------------------- #endif // __ReferenceLJCoulomb14_H__