#ifndef OPENMM_STANDARDMMFORCEFIELDIMPL_H_ #define OPENMM_STANDARDMMFORCEFIELDIMPL_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "ForceImpl.h" #include "StandardMMForceField.h" #include "Kernel.h" #include #include #include namespace OpenMM { /** * This is the internal implementation of StandardMMForceField. */ class StandardMMForceFieldImpl : public ForceImpl { public: StandardMMForceFieldImpl(StandardMMForceField& owner); ~StandardMMForceFieldImpl(); void initialize(OpenMMContextImpl& context); StandardMMForceField& getOwner() { return owner; } void updateContextState(OpenMMContextImpl& context) { // This force field doesn't update the state directly. } void calcForces(OpenMMContextImpl& context, Stream& forces); double calcEnergy(OpenMMContextImpl& context); std::map getDefaultParameters() { return std::map(); // This force field doesn't define any parameters. } std::vector getKernelNames(); private: void findExclusions(const std::vector >& bondIndices, std::vector >& exclusions, std::set >& bonded14Indices) const; void addExclusionsToSet(const std::vector >& bonded12, std::set& exclusions, int baseAtom, int fromAtom, int currentLevel) const; StandardMMForceField& owner; Kernel kernel; }; } // namespace OpenMM #endif /*OPENMM_STANDARDMMFORCEFIELDIMPL_H_*/